Carassius gibelio (silver crucian carp): 128016454
Help
Entry
128016454 CDS
T08819
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128016454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
128016454
03009 Ribosome biogenesis [BR:
cgib03009
]
128016454
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128016454
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 related factors
128016454
Complex B
128016454
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
128016454
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
90S particles
Helicases
128016454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Atrophin-1
nSTAND3
Glyco_hydro_98M
SRP54
AAA_25
Flavi_DEAD
DUF3915
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
128016454
NCBI-ProteinID:
XP_052456923
LinkDB
All DBs
Position
A7:3621207..3651620
Genome browser
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDERSKDRDRDRDRDRDRDRDRDSKASSVPL
LSGVSMGGILPLKQTAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKERFNDILNRHQ
SFVLVGETGSGKTTQIPQWCVDMVKALPGPKRGVACTQPRRVAAMSVAQRVADEMDIMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCDFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHEAVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPGYYEMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggcatcggttggacctaggcgatgattattcgtcgagcaagaagaggtcg
tctgacggtaaggaccgagatcgagatcgggacgagaggtcgaaggatcgtgaccgtgac
agagaccgtgaccgggatcgagaccgggatcgagacagcaaggcgtccagtgtgccgctc
ctctccggcgtgtccatgggtgggatactccctctgaagcagacggccatgcagcagcag
atcaaccccttcaccaacctgcctcacacgccgcgcttctacgagatcctcaagaagagg
ctgcagctgcccgtctgggagtacaaggaacgctttaacgacatcctcaaccgccatcag
agctttgtgctcgttggagagaccggctctggaaagaccacacagatccctcagtggtgt
gtggacatggtgaaggccctcccggggcccaagcgcggcgtggcttgtacacagcctcgt
agggtggcagccatgagcgtggctcagagagtggctgatgaaatggacatcatgctgggg
caggaggtcggatactccatcagatttgaggattgtagctctgccaagaccatactgaaa
tatatgacagacggtatgttgctccgcgaggctatgaacgacccgctgctggagcgatac
ggtgtcattattctggatgaggctcacgagcgcaccttagccacagatatactgatgggc
gtcctcaaagaagtggttcggcagagatctgaccttaaggttattgttatgagcgctact
ctggacgctgggaagttccaggtttatttcgacagctgccccttgctcaccattcccggc
cggacgcatcccgtggagatcttctacacgccggagccagagagggactacctggaagcg
gccattcgcacggtcatccagatccacatgtgtgaggaagatgagggagatgtgctgctc
ttcctcaccggacaggaggaaatcgacgaagcttgcaaacggatcaaacgtgagattgac
gatctcggccctgatgttggcgacatcaaaatcatcccgctctactccacgcttccacca
cagcaacagcagaggatcttcgagccgcctccaccccgcaaacccagcggagccatcggc
cggaaggttgtggtttctacaaacatcgctgagacgtctctgaccatcgatggcgtggtg
tttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgtattagagtcgag
tcgctgctcgtaacggctattagtaaggcttcggcccagcagagagctggtcgtgctgga
cgtactcgtccaggaaagtgcttccgactctacaccgagaaggcctacaagactgagatg
caggataacacataccctgagattctcaggtcgaatttgggctccgtggtgctacagctc
aagaagcttggtatcgatgaccttgtgcactttgacttcatggacccaccagctcctgag
accctgatgcgagccctggagctgttgaactatctagcggcgctgaacgacgacggtgac
ctgacggagctgggatccatgatggccgagttccctctcgacccccagctggccaaaatg
gtcatcgccagctgcgacttcaactgctccaatgagatcctttccatcaccgcaatgcta
tcagtcccacagtgctttgtgcggcccaccgaagctaagaaggcagccgacgagtccaaa
atgaggttcgcccacatcgacggggaccacctgaccttgctcaacgtctaccacgccttc
aaacagaaccacgaggcggtgcagtggtgctatgataacttcgttaactaccgctcgctg
atgtcggctgataacgtgcggcagcagctctcacgcatcatggaccgcttcaacctgcca
cgacgcagcacagagttcaccagccgagactattacatcaacatccgccgcgctctcgtc
acaggcttcttcatgcaggttgctcacctggagcgcaccggccactatctcacagtgaag
gacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgagtgggtt
ctctataacgagtttgtgctgaccaccaagaactacatccgcacctgcactgatatcaaa
cccgaatggctggtgaaaatcgctccaggatactacgaaatgagcaacttccctcaatgc
gaggctaaaaggcaactggagcgcatcgtcgctaaacttcaaaccaaggagtactctcaa
tactaa
DBGET
integrated database retrieval system
