Carassius gibelio (silver crucian carp): 128016488
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Entry
128016488 CDS
T08819
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128016488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
128016488
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128016488
Spliceosome [BR:
cgib03041
]
Complex C
Other components
Step II factors
128016488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
AAA_16
AAA_30
PhoH
AAA_7
ATPase
SRP54
Motif
Other DBs
NCBI-GeneID:
128016488
NCBI-ProteinID:
XP_052456976
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All DBs
Position
A7:complement(5567545..5586468)
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AA seq
1259 aa
AA seq
DB search
MTSTEMEDDLSLHRLEGSDPGVQVGGLMVKKRSASSEPHVFRAPAPRASLLGLDLLAAQK
RKEREGKERLEDQPKRSKVSSYTDWEEGKSDSGSDEEDQEEGDSRNGKKERKYRVTGSET
PSNPGGVSEEFKLKHQQREKDRREHGVCASSKEDKSRDKERSRDRDYDRSRDRDRRRDRD
DRESHGSSSSRSERGDGSARGERSQRDGTSERMSRGTRRDEPESPRDRSKDVTTPSRSNW
DEDDSGYSSSKHSHWESPSPAPSHRECDRSERSQRSVRDSERRDRSSKPQYPAETPLPTP
SYKYNEWANDRKHLGSTPRLSRGKGDKKEEREDGILFTNEEEKEQWEEDQRQADRDWYMM
DEGYDEFHNPLTSSSEEYVKKREQIVQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQ
RLEVDEDFEEDNAARVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQ
LVRRHREQKERKKAQHKHWELAGTKLGDIMGIKKTEDGSDGKAVGEDGNVDYRAEQKFAD
HMKEKNQASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQ
YLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEMNSNLGEEVGYAIRFEDCTSEKTVIKY
MTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSATM
DSDKFAAFFGNVPIFHIPGRTFPVDILFSKVPQEDYVEAAVKQALQIHLSGMVGDILIFM
PGQEDIEVTSDQIVERLEDLDNAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNI
AETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYR
LYTQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQL
WILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPSIFYRP
KGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQ
LKDIMVQQKMNLVSCGSDWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSAL
FGMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKE
EITNMEEEMSLAQEQILARKEEQERKNNLGSVRSIKILTPGRREETPMTPKRTPARFGL
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacagagatggaggatgatttgtccctgcatcggctggagggcagtgaccca
ggggtccaggtcggggggctgatggtgaagaagaggagtgcttcatcagagccgcatgtg
ttcagagctcctgctcctcgagcctcgctcctgggcctcgatctgctggccgcacagaaa
cgcaaggagcgcgagggcaaggagaggctggaggatcaacccaagagatccaaggtgtcg
tcctacacggactgggaggaggggaagagtgattcagggtctgatgaagaagatcaagaa
gagggcgatagcaggaatgggaaaaaggaaaggaagtaccgtgtcacaggctcagaaacc
ccctcaaacccaggaggggttagtgaggagttcaagctgaagcatcagcagagggagaag
gacagacgtgagcatggggtgtgtgcgtcctccaaagaagacaagagcagagacaaagag
cgatccagagacagagactacgatcgctctcgtgacagagacagaaggagagacagagat
gaccgtgaaagtcatggatccagcagcagtcgctccgagcgcggtgatggcagtgcgagg
ggtgagcgctcccagagggatggcacgtccgagcgaatgagtcgcggtactcggcgcgat
gagcccgaatcaccccgcgacagatccaaagatgtgaccactccatcacgctctaactgg
gatgaagatgacagtggatattccagctcaaagcactctcactgggagagtccgtcccct
gccccgtcccaccgggagtgcgaccgctccgagcgcagccaacgctctgtccgtgacagt
gagaggagagacaggtcaagtaaacctcagtatccagcagaaactcctctaccaacccca
tcatataagtacaacgagtgggccaatgacaggaagcaccttggctccaccccacgcctg
tcccgcggaaaaggcgataagaaggaagagagagaggacgggatcctgtttactaatgaa
gaagagaaagaacagtgggaggaagatcagcggcaagctgatcgggactggtacatgatg
gacgaaggttacgatgagttccacaaccccttgacatccagttcagaggaatatgtgaag
aagagggagcagatcgtacagaagcagacccagaaacgcatctcggcgcagaaacggcaa
atcaacgaggataatgagcgctgggagaccaaccgcatgctcaccagtggagtggtccag
cgtttggaggtggatgaggactttgaggaagacaatgcagccagagtgcatctgcttgtc
cataaccttgtgccacccttcctggacgggaggatcgtcttcacgaagcagcctgagccg
gtcattccagtgaaagatgcgacctctgacatggccatcatctcccgcaagggcagtcag
ctggtccgacgtcaccgagagcagaaagaaaggaagaaggcgcaacacaaacactgggag
ctcgctggcaccaaactgggagacatcatgggaatcaagaaaacagaggatggatcagat
ggaaaagctgttggagaagatggaaatgtggattacagagcggagcagaagtttgctgac
cacatgaaggagaagaatcaagcgagcagtgagtttgctaagaagaagaccctgttagag
cagaggcagtatctgcccatctttgctgttcgccagcagctactcaacatcatcagggat
aacaatattgtgattgtggtgggggaaacgggcagtggtaagaccactcagctcacacag
tatcttcatgaggatggttacaccagctatggcatggtgggctgcacacagccccgcaga
gtggcagctatgagcgtggccaagagagtcagcgaagaaatgaacagcaacctgggagaa
gaggttggttatgccatccgttttgaagactgtacgtcagagaagactgtaataaaatac
atgacggatgggattcttctgagggaatctctgcgggagtcagatttggaccactatagc
gcggtaatcatggacgaggcccatgagcgctccctcaacactgacgtgctcttcgggctg
ctccgagaggtggtgtctagacgctcggacttgaagctcattgtcacatccgccaccatg
gactcggacaaatttgcagcattcttcggcaatgtacctattttccacattcccggcagg
acgttcccagtggatatcttgttcagcaaggttcctcaggaggactatgtggaggcggct
gtgaaacaggctttacagattcatctcagcgggatggtgggtgacatcctcatcttcatg
cccggtcaggaggacatcgaggtgacgtcagatcagattgtggagcgactggaggatctg
gataacgctccggctctggcagtgctgcccatctactcccagctgccctcggacctgcag
gccaagatcttccagaaggctcctgatggtgtgaggaagtgtatcgtcgctacaaacatc
gctgagacgtctctgactgtggacggcatcatgtttgtggtggatgctggttactgcaag
ctgaaggtgttcaatccccgtattggcatggatgcgctgcaggtttaccccatcagtcaa
gccaatgcaaaccagcgggccggcagagcaggaagaacgggcccgggacagtgttacagg
ttatacactcagagtgcctacaagaatgaaatgctcaccaccactatcccagagatccag
cgcactaacctggccaatgttgtgctcctgctcaagtctctgggagttcaagatctcctg
ctcttccacttcatggacccaccgcctgaagacaacatgctgaactccatgtaccagctg
tggatcctgggagcgctcgacaacacaggctctctgacgcccaccgggcggctcatggtg
gagtttcctcttgatccggctctgtctaaaatgctgatcgtgtcatgtgacatgggctgc
agtgccgacatcctcatcatcgtctccatgttgtctgtgccgtccatcttctatagacca
aagggtcgagaggaggagagtgaccaggtgagagagaagttctctgtgcctgagagtgat
cacctgacctacctcaacgtttacctgcagtggaagaacaacaattactccagcatctgg
tgcaacgatcacttcatccacaccaaagcaatgcgtaaggtgcgtgaggtgcgatctcag
ctcaaagacatcatggtgcagcagaaaatgaacctggtctcctgcggctcagactgggat
gtgatcaggaagtgcatctgtgctgcgtacttccatcaggctgctaaattaaagggaata
ggggagtatgtgaacgtgagaactgggatgccctgccatctgcaccccaccagcgctttg
ttcgggatgggctacacccccgactacatcatctaccacgagctggtcatgaccacaaag
gagtacatgcagtgtgtgacggctgtggacggcgagtggctggctgagctgggacccatg
ttctacagcatcaaacacgcaggaaagagcagacaggagaaccgaaggagagccaaggag
gagatcaccaacatggaggaggagatgtctcttgcacaagaacagatccttgcacggaaa
gaggagcaggagaggaaaaacaatctgggcagcgtcaggtcgataaagatcctcacccca
ggaaggagagaggaaacgcccatgacaccgaaacgaacaccagcccgatttggcttatag
DBGET
integrated database retrieval system
