Carassius gibelio (silver crucian carp): 128016661
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Entry
128016661 CDS
T08819
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128016661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgib03036
]
128016661
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
128016661
REST complex
128016661
Heterochromatin formation proteins
Other heterochromatin formation proteins
128016661
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
128016661
NCBI-ProteinID:
XP_052457301
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All DBs
Position
A7:15731914..15754814
Genome browser
AA seq
1261 aa
AA seq
DB search
MKRRLEDQDTVIGSQRRLPGGVDSFQHSVLNSASSLYETPPDNMQPSSSMQYSVSQTYQL
SMAQSSGGHGHTSSSAVHTGPHHHGPAVQPVGQGHAHATPAPAPTLGQQQFQRLKVEDAL
SYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLP
PGYKIEVQTNDLVNVTTPGQIHHITPHGISVQNLPITQPAQLQTQTAAPTSTAALVIPSQ
PTPAKISKPMPSPALTPTSQPNPSIPSYASPRSPSVQSHTPISSSTAGSTPLQNNQPVEF
NHAINYVNKIKNRFHNQPEVYKSFLEILHTYQKEQRNAKEAGGNYTPTLTEQQVYAQVAQ
LFKNQEDLLSEFGQFLPDANNSLLLSKTTAEKAESVRIDHGVTVKRPQLNNKQRFNQNGC
QIRRHPGPPTTPPVKKKQKLLGRDHSVAEASKLGIGAESLFFEKVRKALRSSEAYDNFLR
CLVIFNQDVISRAELVQLVLPFLGKFPELFTWFKNFLGYREGAHIESFPKERATEGIAME
IDYASCKRLGSSYRALPKSFQQPRCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQY
EEHIYRCEDERFELDVVLETNLATIRVLEAVQKRISRMSAEEQAKFRLDNTIGGSSEVIH
RKAIQRIYGDKAPDIIDGLKTNPAVSVPIVLKRLKTKEEEWREAQRGFNKIWREQNEKYY
LKSLDHQGINFKQNDAKVFRSKMLLNEIETLYDERQEQASEDNAAPPSGPHMTLVYEDSQ
ILEDAAALIIHHVKRQSSIHKDDKYKIKQIIHHFIPDMLFARRGELSDVEEEEEEETEPD
EDGTKKHNGTTSTKSKLLFSHTAAAQQKLSNCDDAYNLFYVNNNWYIFQRLHQILCSRLL
RIYAQAEKQIEEDGREREWEKNVLGLKREKNDSPAIQLRLKDPMDIDVEDYYSAFLEMVR
NLLDGNMETSQYEDQLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLSE
CANKSTGGSLSTQASRGSVESAYQRKAEQLMSDENCFKLLFQKSKGAVQLAVELLDTEEE
NSDGPVDTERWPDYVERYLNTSSASPELREHLSQKPVFLPRNLRRIRKCQRGQEMQMREA
KETVKKSSEGGEDSKMECMFKLNSYKMVYVFKSEDYMYRRTAQLRAHQSHQRVSTRLHQR
FQAWLDRWRKEHVTSDMAAATYKWLMGEGREGLLPCRTVCEPKILHFQNVNRYKVTYSTT
S
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgcttggaggatcaggacacagtgatcggctctcagcggcggctccccggg
ggtgtggacagctttcagcacagtgtcctcaactctgcctcctccctttacgagactcca
ccagacaacatgcagccatcatccagcatgcagtactcggtctcacagacctatcagttg
tcaatggcccagagttctgggggacatggacataccagcagttcagctgtgcacactgga
cctcatcaccatgggccagcggtccagccagtgggccagggtcatgctcatgctacccca
gcccctgccccaacactgggtcagcagcagtttcaaaggctcaaggttgaagatgcgctt
tcctatttggatcaagttaagcttcagtttggcaatcagccacaggtctacaatgacttt
ctggatatcatgaaggagttcaagtctcaaagcattgatacaccaggtgtgatcagcaga
gtctcccagctcttcaagggccatccagacctcatcatgggcttcaacaccttcctgcct
cctggctacaagattgaggttcagaccaatgatctggttaatgtgaccactcctggccag
atccaccacatcacgccgcatgggatctctgttcagaaccttcccataacccagccagcg
caactccagacccaaacagcagctcccaccagcactgcagccttggtcatccctagccag
ccaacccctgccaagatcagcaagccaatgccgtctcctgcacttaccccaaccagtcag
cccaatccgtccattccctcatacgcctccccgcgctcgccctcggtccagtcccacact
cccatcagcagcagcactgccggttcaaccccgctgcagaacaaccagcctgtagagttc
aaccatgctatcaactatgtgaacaaaatcaagaaccgctttcataaccagccagaggtc
tacaaatccttcttggaaattctgcacacataccagaaggagcagcgtaatgctaaggag
gcagggggaaactacacacccactctcacggagcagcaggtctacgctcaggtggcccag
ctcttcaagaaccaagaggaccttctttcagaattcggccagttcctgccagatgctaac
aattcattgttattgagtaagaccacagctgagaaggctgaatctgtgcgtattgatcac
ggggtgaccgtaaagagaccccaactaaacaacaagcagaggtttaaccagaatggctgc
caaatccgcagacacccagggccgcccactacaccccctgttaagaaaaagcaaaagcta
ttgggaagagaccattcagtggccgaagccagcaaacttggaattggtgctgaatctctc
ttttttgaaaaggtgcggaaagcactgcggagttcagaggcttacgacaatttcttacgc
tgtttggtcatcttcaatcaagatgtgatctcacgggcggaacttgtgcagctggtcttg
ccatttttggggaaattcccagagctttttacatggttcaagaacttcctcggctacaga
gagggtgcccatattgagagctttcccaaagagcgagccactgaaggcattgcaatggaa
attgattatgcgtcctgcaaaagattgggctccagttacagagccctgcccaagagcttc
cagcagcctcgatgtacaggcaggactccactgtgcaaagaggtgttgaatgatacgtgg
gtgtcatttccatcctggtctgaggactcaaccttcgtcagctccaaaaagacccagtat
gaagagcatatatatagatgtgaagatgagcgctttgagcttgatgtggttctggagaca
aacctggccactatccgtgttctggaggctgttcagaagaggatctcgcgcatgtctgct
gaggaacaggccaagttccggctggacaacaccatcggaggctcctctgaggtcatccat
cgtaaagctattcagaggatatatggtgataaagctccagacatcatagatgggcttaag
acgaaccctgctgtctctgtacctattgtactcaaaaggctgaaaactaaagaagaagag
tggcgagaggctcagcgtggcttcaataagatctggagggaacagaatgagaagtattac
ctgaagtctttagatcaccaaggtattaacttcaaacagaacgacgcaaaggtgttccgc
tccaagatgctgctcaatgaaatcgagactctttatgatgagcgtcaggagcaggcttca
gaagacaatgccgcccctccttcaggccctcacatgaccctggtgtacgaggacagccag
atcctggaagatgcagccgctctcatcatccaccatgtcaagagacagtccagcatccac
aaagatgacaagtacaaaatcaagcagatcatacaccatttcatccccgacatgctgttc
gcccggcgcggcgagctttctgatgtggaggaggaggaagaagaggagactgaaccagat
gaagatgggactaaaaagcacaatgggacgacgtcaacaaagtctaagctcctcttcagc
cacacagcagccgcccagcagaagctgagtaactgtgatgatgcctacaacctcttctat
gtcaacaataactggtacatcttccaacggctgcatcagatcctgtgctcccgactgcta
cggatctacgcacaggcggagaaacagatagaggaggatggcagagagagggagtgggaa
aagaatgtcttgggactgaaaagagagaagaatgacagcccggccatccagctgcgtttg
aaagatcccatggacatcgatgttgaagactactactctgccttcttggagatggtgcga
aaccttctggatggcaacatggagacatcacaatatgaagaccagctgagggaaatgttc
accatccatgcctacattgccttcacaatggacaaactcatccagagtatagtgagacag
ctgcagcatatagtaagcgatgagatctgtgtacaggtgaccgatctttaccttagcgag
tgtgccaacaaatccaccggtgggtccctgtccacccaagcttctagaggaagtgtcgag
tcagcctaccagcgcaaagccgagcagctgatgtccgatgagaactgttttaagttattg
ttccagaagtctaagggggctgtgcagctggccgtggagctgttggacacggaggaggag
aactcggatggacctgtggataccgagcgctggcccgactacgtggagcgatatctgaac
accagctcggcctctccagagctgcgagagcacctctcccagaagcctgtgtttctaccc
aggaacctaaggcgaatccggaagtgccagagaggtcaggagatgcagatgagagaggcc
aaagaaacggtcaagaaatcctcagagggcggcgaggactcaaaaatggagtgcatgttt
aagctcaattcttacaagatggtgtatgtcttcaagtcggaggactacatgtaccgacgc
actgcacagctgagagcacatcagtctcaccagcgagtaagcactcgtctgcatcagcgc
tttcaggcgtggctagaccggtggaggaaagagcacgtgaccagcgacatggcggccgcc
acttacaagtggctgatgggagagggccgggaggggctactgccctgcagaaccgtctgt
gaacccaagatcctccacttccagaacgtcaacagatataaagtcacctacagcactacg
tcgtaa
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