Carassius gibelio (silver crucian carp): 128017264
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Entry
128017264 CDS
T08819
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128017264
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128017264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
128017264
NCBI-ProteinID:
XP_052458522
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All DBs
Position
A7:complement(32151266..32192626)
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AA seq
1807 aa
AA seq
DB search
MTEILKSRFEFPSSLIQAQAVRTLVTAVLKEKGQNERICQTTAKGQSLESLWEQCSSDST
VVRSACCDALVLLVEQGHADLPYVLNTTLNLLPSARNVQGLIKVVGRLLQIQASQRDNGA
SFTCPYSIRTFPHPYITVLENRPDCWPALLQEIDDFLQLAMDKDEPVYVKMLVPFLRYLY
CEPQRLSENALLRHSLLRVLLQPRGVPEPDSLQEKGASGTRVVCELIHSLFDLLPYMLVD
SVTAVVEFSSFAESLTSALLIDPGFWRKELTQLTLQLLCACQLSLHLGGELMSLLHTLHQ
IIPAHAEELPPEQVIMGISLLLLSASTSQQTALLELAVKIVPPELPPPWGASLLVMPLLQ
VLSCSSLMEALTDTQTHTKNLELTNSLLQRVQRETSDRKEDSTQLSLPLSTWYSELQVAT
SVLHRISVDSIASMEWLYSLQSSLSVCEHVPDSVCLLVSHVIVSSHGDLCRLALDTAAAI
AEADPAKVPCFLPVLMFKLGRVSDPALSHSVLYTLPKLGTHKFCIPQVLHVLQTLGSSSR
LRPVALRLLALLWKKQDRVYPDLQRLMSQLEKSSVVLGKDTQWEQILARAACIRDICRER
PYQHGGDMLAAISDTLMQFSRKDQATPATLALQGLQELCRAEVVDIISTWKALSPKLCCD
TRPLVLKATAELLALVPTLNVKTEEYEKFRNEAVCVLWGYALSQDPEVASPGFKALSEYP
EPSHTILHLPEQIRPVPKQPEEEDEGKENENEKEEDVSVPGTSYVKLVRLTPRSVLPALE
TFLTALVRQEMNQMPRGVYHSALIGVNLRSDQGKTVSGIPSFMLKTYEKNKQPGLKPGLA
AGLLLCYDLPVQTDKDGHPITRFLVSRGRSYQQMLATLIHEVNIQPSEWHRSLLLPQAWR
GFMSRAYHAALKGRKAELEMLQKQGKESPEELQYKQHYAWLWVRDQLTDVVKSAAKDSPV
VQGNSILALSGLAVVLTRYESNLPTQSESGLEVGPDFLPTVHWLTMVIDTLLSIVSSNSN
PKAQVFPWFIHRSYSGENTASVIARSCAALGLALLVPVLVTSCKKNIPAILGTLEAGLPG
SPSADESQALQFHSGLALGMFLAWLHDERVSDISGQSVAELLVKHLERLEDCCFNTNLEY
NAGCVLGVGLVLSSLSSSSQSERDGVHVSLTLDRLLQSLQDSSNMSRMQQEVLAYSVACV
AVSAFSAGIIEASKAEESMNTLRTLTEESQQTPGFALALGLTVFGLSSFGHGKAVDIQPR
LLAAWTKILLAEGCPTMQRLSALNGLIALVGSEMALIQMKSESEESSQQQSRLNEVIRAI
TQIITFSGTIGLQSNGACLLGHLHLAHMSSSHSRTAVPQDFGYLPEKSVIRASVDFITEA
GRKGPEFTPPHLVKTVLAALVTVGGSFQYPPVNWSAILSPLMRLGFGEEVQHHCLALAAS
QAQSSQSAALFLGIWLVPPLVHSLSMHSRASLYECLNSWMKHVAEDKLQVYVDSLAVQQF
VPDTRPHRLPLCLSILRGLSKAMAVPNPPQNCWTALCSTTEKIYNLLPDNIPAGEVHLYE
AMCSCLSELSDTEIDRILKVTEANVEKTAFILCYLTSKGRVPLLGLNDVISTILQVGNKK
RISWLLLQALHQSRFASSPSTGVSKRMEWLLELMGHIRNVAYGSPSVKCVSVIEGTDFLL
GVFAAAVVSWADHCAPLLIGIRAQWFPWEQSSLTTDLSHDLCVNPAITELSVASCLLAIP
CSMKKLLCKEPWKSQSQKFIDWLFSITEGPKLGFSETALLTAKATLMALRSSSEFKKKGV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaattttgaagagcaggtttgagttccccagctccctcattcaagcccaggct
gtgaggacgctggtcactgcggtgctgaaagagaaaggccagaatgaaaggatttgtcag
acaaccgctaaaggtcaatcgctggagtctctttgggagcagtgcagcagtgacagtact
gtcgtccgctcggcctgctgtgacgctctggtgctgcttgtagaacagggacatgcagat
ctgccatatgtgctcaacaccacccttaacctcctgccctcggcacggaatgttcaaggg
ctgatcaaagtggttgggaggctgctacagatccaggcaagtcagcgggataacggagca
agcttcacctgtccatactcaattaggaccttccctcacccctacattacagtgctggaa
aaccgccctgactgctggcctgctctgctccaggaaattgatgacttccttcagctggct
atggacaaagatgagccagtatatgtgaaaatgctggtcccgttccttcgttacctgtac
tgcgagccccagaggttgtcagaaaacgctctgcttcgacacagcctcctcagggtcctg
ctccaacctcgaggggttcctgagcctgacagcctgcaggaaaagggggcgtctggcact
cgggtggtctgtgagctaatacacagtctctttgacctgcttccatacatgctggtggac
agtgtaaccgcagtggttgagttcagctcatttgctgaatctctgacatcggctctgctc
atcgatccaggcttctggaggaaggaactgactcagctgacacttcagcttctgtgtgcc
tgtcagctgagtcttcatctgggaggagaactgatgtctctccttcacacactccaccag
ataatacctgcacatgcagaggaactcccgcctgagcaagtgatcatgggaatctccctg
ctactgctaagtgcctccacctctcaacaaactgccctcctagagctcgctgtaaagatt
gtccctcctgagcttccacctccttggggtgcatctttgctggtgatgcccttgttacag
gtgctgtcctgctccagcctcatggaagccctgacagacacacagacacacacaaagaac
cttgaactgaccaattcactgttgcaaagggttcaaagagagacctcagatcgaaaagag
gactccacacagctgagtttgcctctcagcacttggtacagtgagcttcaagtggccacc
agcgtcctgcaccgaatttccgtagactccattgcatccatggaatggctttactccctg
cagtcatcactctctgtctgtgaacacgtcccagatagtgtttgtctcctggtgtcccat
gttatcgtcagcagtcatggggatctctgcaggttagcgctggacactgctgctgccatc
gccgaggccgaccctgctaaggtgccatgtttcctccccgtcctgatgtttaaactgggc
agagtctctgatccggctttgtctcactctgttctctacactctgccaaaactgggaacc
cacaagttctgtatcccgcaggtgcttcatgtcctccaaactctgggcagttcatccaga
ctaaggcctgtggcgctgcgcctcttagctcttttatggaaaaaacaggaccgtgtgtat
ccggacctgcagagactgatgtcacagcttgaaaaatcatcagtggtcttgggaaaagat
acgcagtgggagcagatattggctagagcagcctgcatcagagacatctgcagagagagg
ccgtaccaacatggaggagacatgctggctgccatcagcgacacactgatgcagttctcc
aggaaggaccaggccacccctgctactctggcactgcagggcttacaggagctctgtaga
gctgaggtagtggatatcatctccacgtggaaggccctctctcctaagctgtgctgtgac
accagacccctggtcctaaaggccacagctgaacttctggcattagtacctactttaaac
gtcaaaactgaagaatatgagaagttcagaaacgaggcagtctgtgttttatggggctac
gcacttagtcaggacccagaggttgcaagcccgggatttaaagctctctcggagtaccct
gaaccgtctcacaccatcctacacttgccagagcagatcagacctgtaccaaagcagcct
gaagaagaggatgaagggaaggagaatgagaacgagaaggaggaagatgtttcagtgcca
gggacgtcatacgtgaagctagttcgtctcacaccacgatctgttttaccagcccttgag
accttcctaacggctctagtacggcaggagatgaaccaaatgccccgtggcgtgtaccat
tcagctctgattggggtgaatttgcgctctgaccagggaaaaactgtatctggaattcct
tcttttatgctgaaaacatatgagaagaacaagcagcccggtctgaaacctggcttagca
gctgggcttctactctgttatgaccttcctgttcaaactgacaaagatggacatccaatc
acgcgatttcttgtcagcagagggcggagttatcaacaaatgttagccacccttattcat
gaggtgaacatccagccgtctgaatggcatcgttctctgctcttgccccaggcctggcgg
ggcttcatgagccgggcttaccatgcagctctcaagggtcgaaaggcagagctggagatg
cttcagaagcagggtaaagagagcccagaggaactgcagtacaaacagcactatgcctgg
ctctgggtcagagaccaactgactgatgtggtcaaatctgctgccaaagatagtccagtt
gttcaaggtaattctatcctggcactaagtggcctggctgttgttttaaccagatatgag
agcaacctccctacacagtctgaaagtggacttgaggtgggtccggacttccttcccaca
gttcactggctgacgatggtgattgacacactgctcagcattgttagcagtaacagtaac
cctaaagcacaagtcttcccatggttcattcatcgctcatactcgggtgagaacacagcg
agtgtgatcgcacgctcctgtgctgctctggggctggcgttgttggtgccggtgctggta
acctcgtgcaaaaagaacattcctgctatactgggcaccctagaggcgggactgccaggc
tcgccctccgcagacgagtctcaggcactccagtttcacagcggcctggctctgggcatg
tttctagcctggctgcatgacgagagagtcagtgatatatctgggcagtcggtagcagag
ctgctagtgaaacatctggaacgactggaagactgttgctttaatacaaatctggagtac
aatgctggttgtgtgttaggtgtggggttggtactcagttctctcagtagcagtagtcag
tctgagcgggacggtgtgcatgtgtctctaacgctggacagactcctgcagagcctgcag
gacagcagcaatatgagccgcatgcagcaggaggttttggcctattctgtggcgtgtgtt
gcagtttcagcatttagtgcaggcattattgaggccagcaaggctgaggaaagcatgaac
acactgcgcactctgacagaggaaagccaacagacaccaggctttgctttggcattgggt
ctcacagtgtttggactctcttcttttggtcatggtaaagcggtagacatccagcctcgt
ctgctggctgcctggaccaagatactgctggcagagggttgtcccacaatgcagaggctg
tctgccctcaatggactgatcgcattagtgggatcagagatggctctcattcagatgaag
agtgaatctgaggagtcctcacagcagcagagcagactgaacgaggtcatccgagccatt
acacagatcatcactttttcaggaacaataggtctgcagtctaacggagcatgtctgctt
ggacacctgcatctggcccacatgtccagcagccacagtcgaaccgcagttcctcaggac
tttggttatctcccagagaaaagtgtcatccgagcttcagtagacttcatcaccgaagcg
ggaagaaaaggacctgagttcactcctccacacctggtgaagacggtgctggcagcgtta
gtgacggtcggtggaagcttccagtatcctccagtcaactggagcgccatcctctctccg
ctgatgagactcggctttggagaggaagtgcagcatcactgtttagcgttagctgccagt
caggcccagtcttcccagagtgccgcacttttcctcggcatctggcttgtgcctcccctg
gttcacagcctgagtatgcactccagggcttctctgtacgagtgcctgaactcctggatg
aagcacgtggctgaagacaaactccaggtgtacgtggacagtctggcagtccagcagttt
gtacccgacacacgtcctcatcgcctgcccctgtgcctgtccatcctgcgtgggctgtcc
aaagccatggcggtccccaacccgccccaaaactgctggactgccctgtgctccaccact
gaaaagatctacaacctcttacctgataatatccctgctggtgaggtgcacctgtatgaa
gccatgtgttcgtgtctgtctgaactgagcgacactgagattgaccgcatacttaaagtc
actgaggctaatgtggaaaaaacagctttcatcctctgctacctgacctctaaaggcaga
gtccctctgctcggactcaatgatgtcatcagtaccatcctccaggtggggaataagaaa
cgaatcagctggcttctcctgcaggccctccaccaatcacgcttcgcctctagtcccagt
acaggggtctctaaacgaatggagtggcttttggagttaatggggcacatcagaaatgtt
gcatacggatctccttctgttaaatgtgtcagtgttatagagggaacagacttcctcctc
ggtgtgtttgctgcagcagtggtgtcttgggctgatcattgtgctccgcttctcattgga
atcagggcccagtggtttccctgggaacagtcctctctgacaacagacctgtcccatgac
ctctgtgtcaaccctgctatcacagagctgtcggtcgcgtcatgccttcttgcaatccca
tgcagcatgaaaaaactactctgcaaagagccgtggaaatcccagtcacagaagttcatc
gactggctcttcagtattacagaaggtcctaaactaggtttctctgagactgccttactt
acagccaaagcgactctaatggctctgagatccagctctgagttcaagaagaagggtgtg
tggaccagggcgtatggttggtga
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integrated database retrieval system