Carassius gibelio (silver crucian carp): 128017465
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Entry
128017465 CDS
T08819
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128017465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128017465
03036 Chromosome and associated proteins [BR:
cgib03036
]
128017465
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128017465
Coactivators
SAGA/TFTC/STAGA complex
128017465
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128017465
STAGA complex
128017465
TFTC complex
128017465
SAGA complex
128017465
SLIK complex
128017465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
VPS8_N
WD40_like
LisH_PAC1
PROPPIN
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
128017465
NCBI-ProteinID:
XP_052458836
LinkDB
All DBs
Position
A1:28289848..28295048
Genome browser
AA seq
741 aa
AA seq
DB search
MAAVQDGPMELDAEKETKPEILSDGTSNLSGNTASGTLSSSPLTAAPAGGAPKMEDQQTL
IAVLQFLKRNKLTDSVEILRREAGLGEDQEDSLATDGSGGGKGDGDGGDAHSLLSRVSIT
SAAAPQNMPVKRADDQPDVSVVLSAYSQQGDPSLYQVYYSGLKNFIESVLDCHRAELSQL
FYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLCGLTKKEHLKGNEALLD
FRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSL
GGEARREVNKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSLGSKSKKQDP
NAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGSENLPSICFYTFLNAYQGLTAVDFT
DDSSLLAGGFADSTVRVWSVTPKKLRKVKSAADLNMIDKESDDVLERIMDEKTASESKIL
YGHSGPVYGVSFSPDRNYLLSSSEDGTVRLWSLLTFTCLVGYKGHNYPVWDTQFSPFGYY
FVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTVRLWDVLNG
NCVRIFTGHKGPVHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYALKF
SRDGEILASGSMDNTVRLWDSMKAFDEVETDDFTATTGHIHLPDNSQELLLGTYHSKSTP
VTHLHFTRRNLLLAAGGYNSQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggaccgatggagctggacgcagagaaagagacaaagccagag
attctcagcgatgggacgtcaaacctctcggggaacacagcgagcgggacgctgtcgtca
tcgcccctcaccgctgcccccgccggcggagccccgaagatggaggaccagcagactttg
atcgcagttctgcagtttctaaagcggaataaactgacggattctgtggagatcttgcgg
cgggaagccggtctaggagaagatcaggaggactcgctggctaccgacggcagcggagga
gggaagggagacggggatggaggggatgcacactctctgctcagccgggtgtccatcaca
tcagcagccgccccccaaaacatgcccgtgaagagagcagatgaccagccggatgtcagt
gtggtgttatcagcgtacagccagcagggggatccctctctgtaccaggtgtactacagc
ggcctgaagaacttcatcgagtccgtgctggactgtcaccgagcggagctgtcccagctc
ttctaccctctgttcgtccacatgtacctggagctggtctacaacaaccatgagaacgaa
gcaaaggctttctttgagaagtttagcggtgatcaggagtgttactatcaggatgacctg
cgcgttctctgcggcctcactaagaaagagcacctgaaggggaacgaggcgctgctggac
ttccgcaccagccgtttcgtgctgcgcatctccagagactcgtaccagctgctgaagaga
cacttgcaggaaaggcataataaccagatatggaacatcattcaggagcacttgtacatc
gacatctttgacggcatgcctcgcagcaagagccagatcgacagcatgtctggcagtctt
gggggagaggccagacgagaagtcaataaagccaaggtattctatggactgctaaaggag
ccagagattgaggtcccgttagatgatgaagatgaagaagcagagaatgaggaaggcaag
cccaagaagaagaaaacaaaaaaggacagcctgggctccaagagtaagaaacaagacccc
aacgctcctcaacagaacaggatccctctgccggagctgaaggactcggacaaactggat
aagatcatgtacatgaaggagagcaccaaaagaatccggctgggctccgagaacctgcct
tccatttgcttctatacgttcctcaacgcttaccagggtttgacggcggtggacttcacg
gacgactccagtctgttggcgggagggtttgcagactccacagtccgtgtgtggagcgtc
acacccaagaaattgcgcaaagtcaaatctgcagcagatctgaatatgattgataaagag
tctgatgacgttctggagaggatcatggatgagaagacggccagtgagtcgaagatactc
tacggtcacagtgggccggtgtatggtgtcagcttcagtccagacaggaactatctgttg
tccagttcagaggacggtacggtccgactgtggagcctgctgacgtttacgtgtctcgtg
gggtataaaggacataactatccagtgtgggacactcagttctcacccttcggctattac
tttgtgtcaggaggacacgatagagtagcacgcctctgggcgacggatcattaccagccc
ttgaggatatttgccgggcacctggctgacgtcacctgcacgcggttccaccccaactct
aactatgtggccacaggctcgaccgaccgcaccgtacgcctctgggacgtcctgaatgga
aactgtgtccgcattttcacaggtcacaaggggcccgtccattctctagcattctcacct
aatggaaagttcctggcgtctggatccacagacgggagagttttgctatgggatattgga
catgggcttatgatcggagagctgaagggtcacacagacacaatttatgccctcaagttc
agcagagatggagagatcctcgcatcaggttctatggacaacacggttcggctgtgggac
tccatgaaggctttcgatgaagtggagactgacgacttcactgcaacgacgggccacatt
cacttgcccgataactcccaggagctgctgctcgggacgtaccacagcaaatcgacacct
gtcacccatctgcatttcaccagacgcaacctgctactggccgcaggcggctacaactcc
cagtga
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integrated database retrieval system
