Carassius gibelio (silver crucian carp): 128017725
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Entry
128017725 CDS
T08819
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04382
Cornified envelope formation
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128017725
04518 Integrin signaling
128017725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128017725
09142 Cell motility
04820 Cytoskeleton in muscle cells
128017725
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128017725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
128017725
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
128017725
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128017725
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128017725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128017725
NCBI-ProteinID:
XP_052459144
LinkDB
All DBs
Position
A7
Genome browser
AA seq
1683 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQHGEHGQMGSSGPE
GVIGSPGPVGPKGENGHVGRKGPPGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGDRARDGVPGLPGAPGLAGRKGQKGEPYYMDLSELNSFIKGPPGPMGFSGA
LGPRGPDGFPGVPGPPGPPGPPGSPGQGYKGEPGEKGDLGPAGLRGSPAVQFNAPAISTI
YKGEKGDKGYGGTPGFPGGPGPPGPFWYRGETGEKGILGLPGLRGPPGLNGPPGLPGIKG
FPGPQGFLGQPGFTGTKGDRGDPGPPGPIVEPEAGIKGPPGDPGFPGYPGITGDTGVPGL
PGLPGAPGVPAILTGRPGNPGFPGSRGPKGQRGNPGQNSYGLEGLPGNQGLPGPPGLPGP
PGRKPNPSSAGPPGFPGRPGPRGFPGDRGFKGFKGENGDCNCLGGGTIGAQGPQGSPGSP
GIAGLNGVKGEIGDAGFPGPRGPQGLDGRAGERGFRGRKGEKGNTQNIPEGRGQKGDMGQ
RGPPGPLGESGNTGRDGSPGFPGQPGPPGEPGFGVTGDKGFPGFPGSKGRPGDRGVPGIG
YPGVAGIKGSQGDPGFNGLPGTPGPPGSPGDSCGRAGLYGASLEEGGTPLPCRIPGELGD
QGYSGNPGVPGPKGQSGYPGGRGRSGFDGPKGERGEPGSGGRPGPQGFPGPRGDPGLPGT
TNAGFQGPPGRDGLPGLPGAKGEPGVVLGATPGGPGSPGRPGQPGDKGQPGAPGLSGRPG
NDGQNGYPGIKGERGVDGIPGPVGPIGPPGEIPAGGVPGPRGPPGAKGFDGSPGFPGLKG
VRGDPGPPGPGGIKGIPGLPGIPGSQGFRGPPGPPGIGTRRGIPGRPGIKGEKGSLGLVG
FPGFPGSPGVQGGPGVKGVPGFTGQDGVPGGTGSRGTKGDRGVPGLPGPSPPSIPANQLL
KGERGDPGGQGLPGFPGPRGDKGYPGLPGREGYPGSPGVADQAKGFPGQPGLPGIPGSFG
FPGPKGSSGVMGFPGLPGMRGDDGLPGVQGFPGTSGQPGGKGEKGDSYELSGPPGQKGLI
GNRGFPGGPGLPGETGDPGLPGVLGFQGQKGFPGEPGAPGFGGSPGLPGIRGLPGYPGQK
GRDGVPGRPGAPGSSGEKGFPGSPGLHGLNGLPGSKGLSGVPGVTEGGRTGAPGVNGLKG
ERGSSQPGAPGRPGEKGSRGDPGASGSRGFAGNPGPPGPPSPSNIPGPPGDSGLPGLDGR
EGPFGPPGRPGPPGPGTLQGDRGDDGYPGRPGIPGPRGEPGGFGAPGMQGSPGFKGQKGD
PGFDGVLGSPGSPGEPGYFGRNGPKGLKGIPGRKGIPGTVFPLNITERMPYGEQGPQGLD
GSDGQAGMPGIPGRPGVPGPKGPRGPMGRLGPVGAAGSPGTFGDPGPPGIQGPTGSQGAR
GSPGMQGRPGPPARSSSIGYTLVKHSQSSQVPMCPQGMSRLWDGYSLLYVEGQEKAHNQD
LGLPGSCLPHFSTIPFLYCTVDEICHYASRNDKSYWLSTTAPIPMMPVADQQISPYISRC
SVCEAPSQAIAIHSQDLSIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDF
RATPFIECNGAHGTCHYFANKYSFWLTIVEQNKQFIHAPSQETLKGVEYRSLISRCQVCM
KIL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttacctgttgtcttgtatgcagtgtctgcacaaggggga
tcaaagctgcaggagccgtgtgcaggcagagactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaacatggggagcatggacagatgggcagcagtggtcctgag
ggtgttattgggtccccagggccagttgggcccaaaggagaaaatggccatgtaggacgt
aaaggccctcctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggagttccaggacaccccggtcaggaggggcccaggggacctccaggcttggat
ggctgtaatgggacacgaggtgacccaggtgacagagcccgtgatggagttcctggtctg
cccggggctcctggactcgctggtcgaaaaggtcaaaaaggagaaccatattatatggat
ctttctgaactaaattctttcatcaaaggccctccaggtccaatgggattttcaggtgca
ttgggacccagaggtccagatggatttcctggtgtgcctggtccacctggtccacctgga
cctccaggaagtccaggtcaaggatacaaaggagagccaggagaaaagggggatcttggt
ccagcaggactcaggggcagtccagccgttcagtttaacgcaccagcaataagcactatc
tacaaaggagagaagggtgataaaggctatggtggtactccaggttttccagggggacca
gggccaccaggcccattttggtatagaggtgaaaccggagaaaagggaatcctgggctta
ccaggcttaaggggtccacctggtctgaacggtcctcctggccttcctgggataaaaggc
ttccctggacctcagggttttctgggacaaccaggttttactggcacaaaaggtgacagg
ggagacccaggtccacctgggccaattgtggaaccagaagctggaattaaaggtcctcca
ggtgatcctggctttcctggttatccggggataacgggagatacgggtgttccagggctt
cctggtctgcctggtgctcctggagtgcctgctattttaacaggtcgtccaggcaatcct
gggttccccggtagtcgtggacccaaaggacaaaggggaaacccaggtcagaattcttat
ggtcttgaaggtcttcctggaaatcagggccttcctggacctccaggtctccctggacca
ccgggcaggaaaccaaacccgtcctccgctggaccacctggttttccaggtcggcctggt
ccaagaggatttcctggagacagaggctttaaagggtttaaaggagaaaatggtgactgc
aactgtttgggtggaggaacgattggtgcacagggacctcaagggtctccgggttccccg
ggtattgcaggcctcaatggtgtgaagggagaaattggtgatgcaggcttcccaggaccc
cgaggtccacaaggccttgatggtcgtgcaggtgaaagaggctttaggggtcgtaaagga
gagaaaggtaatactcagaatatcccagaaggtagaggacaaaaaggtgatatgggtcaa
cggggtcctcctggaccacttggagaaagcggtaacactggaagggatggatctcctggc
tttcctggacaaccaggcccacctggggagcctggttttggggtgactggagataaaggt
tttcctggttttccagggtccaaaggtcgtcctggtgacaggggtgtacctggtattggc
tatcctggtgtagctggaatcaaagggtcacaaggtgatcctggattcaatggtcttcct
ggaacacctggacctccaggttctccaggtgacagctgtgggcgggcagggctttacggt
gcctctttggaagagggaggaacaccacttccctgcaggattcctggtgaacttggagat
caaggatactctggaaatcctggggtgccaggaccaaagggtcagtctggttacccagga
gggagagggcgctcagggtttgatgggccaaagggtgagagaggagaaccaggctctgga
ggtcggccaggacctcagggtttccccggacccagaggagatccaggtttaccaggaaca
actaatgctggctttcaagggcctccaggaagagatggtttaccaggtttgccaggagct
aagggagaacccggtgtggtccttggagccacccctggaggtccaggttctccagggaga
ccaggacaaccaggagacaaaggtcaacctggtgcacctggtttatcagggaggcctggt
aatgatggacagaacggttatcctggcataaagggagaacgaggtgtggatggaatacct
ggtcccgtaggtcccataggtccaccaggagaaatccctgctggtggtgttcctggtccc
agagggccacctggagctaagggatttgatggatctccaggtttcccagggctgaagggt
gtgagaggagatccaggacctccagggcctggtggaataaagggtataccaggacttcct
ggcatcccagggtcacagggattcaggggacctcctggaccccctggcattggaacacgt
cgaggcatacctggaagaccaggaataaagggggagaaagggtctcttggattggtgggg
ttcccaggatttcctggttctcctggcgtccaaggtggcccaggtgttaaaggtgtacct
ggtttcactggacaggatggtgtacctgggggaactggatcaagaggaaccaaaggggat
cgtggtgttcctggtcttccaggaccatctcctccatctattccagcaaatcagctgtta
aagggtgaaagaggtgacccaggaggtcaaggactgcctggtttcccaggaccaagaggt
gataagggttatccagggcttcctggacgtgaaggctatcctggatcacctggtgttgca
gaccaagcaaaaggttttcctggccagccaggactcccaggtattcccggctcctttggc
tttcctggacccaaaggttcatctggagttatgggcttccctggcttaccaggcatgagg
ggtgatgatggtttacctggtgttcaagggttcccaggcacttcaggacaacctggtggc
aaaggtgagaaaggtgattcatatgaattatctggaccccctggacaaaagggtttgatt
ggaaatcgcggattcccaggtggtccaggacttcctggtgaaacaggtgatccagggctc
ccaggagtcttgggattccaaggccagaaaggttttcctggagagccgggagcaccagga
tttggtggctcaccaggcctcccaggcattaggggtctgcctggttatccaggacagaag
gggcgtgatggagttccaggccgtcctggagctccaggttcatcaggagagaaaggtttt
ccaggatcacctggtttacatggactcaatggtcttccaggatccaaggggctgtctggt
gttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaatggcctgaaggga
gagagaggctcatcacaacccggagcacctgggcgcccaggagaaaaaggatccagagga
gaccctggtgcctctggttcgagaggcttcgctggtaatccaggaccccctggaccccct
agtccttctaatatcccaggtcctcctggagactccggacttccaggattagatggacga
gaaggtccttttggccctcctggccggcctggtccaccaggccctggaaccctccaagga
gacaggggggatgatggatatcctgggcgaccagggataccaggaccacgtggagaaccc
ggtggttttggagcccctggaatgcaaggcagtcctggttttaaaggacaaaaaggtgac
cctggctttgatggtgtacttggatcaccggggtcacctggagaaccaggatattttggc
aggaatggacccaaagggttaaagggtattcccggtcgtaagggaattccaggtactgtg
ttcccacttaacataaccgaaagaatgccatatggggaacagggcccacaaggtcttgat
gggtctgatggtcaggcaggaatgccaggcataccaggccgtccaggagtccctggtccc
aaaggacccagaggaccaatgggtagacttggtcctgttggtgcagctggatctcctgga
acttttggtgaccctggacctccaggaatccaaggacccacaggaagccaaggagcgcgt
ggctcaccgggaatgcaaggtcgtcctggtccaccggcgcgcagtagcagtatcggttat
actctggtgaaacacagtcagtccagccaggtgcccatgtgtcctcaaggcatgtccagg
ctgtgggacggatacagtttgctctatgtagaggggcaggagaaagcacacaaccaggac
ctgggattgcccggctcctgcctgccgcatttcagcaccatccccttcctgtactgcaca
gtcgatgaaatctgccactacgctagtcgcaatgacaaatcctactggctgtccaccaca
gcacccattcccatgatgcctgtggcagatcagcagatatctccatacattagccgctgc
tcagtgtgcgaggctccatctcaagctatcgctatccatagccaggatctcagcataccg
acctgccctcagggctggagaagtctgtggattggttactccttcctcatgcacaccgcc
gcaggtgccgaaggaggcggtcagtcattggtgtctcccggttcttgtctggaggatttc
cgtgccacccccttcatcgagtgcaacggtgcccacggcacctgccactactttgccaac
aagtacagcttctggttgaccatagtagagcagaacaaacagttcatccatgctccttcc
caggagacgctgaagggagtcgagtaccgctcactcatcagtcgctgtcaagtctgcatg
aagatcttgtag
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