Carassius gibelio (silver crucian carp): 128018320
Help
Entry
128018320 CDS
T08819
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128018320
09123 Folding, sorting and degradation
03018 RNA degradation
128018320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128018320
03041 Spliceosome [BR:
cgib03041
]
128018320
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128018320
mRNA cycle factors
Stress granule specific factors
128018320
Spliceosome [BR:
cgib03041
]
Complex C
Other components
Complex C specific factors
128018320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RRM_3
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
128018320
NCBI-ProteinID:
XP_052459730
LinkDB
All DBs
Position
A8:complement(8203033..8240024)
Genome browser
AA seq
625 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEALLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINYQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERM
AEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFVNFEN
HEDARRAVNEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKN
LDDSINDENLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYIQRLASIRAIPSPAIPTTYQQSSGYYMTSVPQHQVRSF
YNTVPNLRPVPRWTAQAPRTQAPFTAQFVRQAVPRRPSTTISTVRQASTQVPHVVNNTQQ
MANIGTQTAGGRTAGAGAVVRGVSQYKYSAGVRNVQQVINAPSSAIHQVVQNTEPAVHVR
GQESLTASMLAAAPLKEQKQLLGERLYPLIQALYPTLAGKITGMLLEIDNSELLHMLETP
ESLHSKVEEAVAVLQAHQAKELSEK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcagtggaccagcatacccattagcctctctctatgtcggtgaccttcatcct
gatgtcacggaggccttgctgtaccagaagttttctcctgctggtcagatcatgtccatc
cgtgtgtgccgtgatgtcattacacggagatccctcggatatgcttacattaactatcag
cagcctgctgatgcggaatgtgcccttgacacgatgaactatgaagtcatcaagggtcgt
ccgatcaggatcatgtggtctcagcgagatccaggtctgagaaagtctggtgtgggaaac
atcttcatcaagaacatggatgagtctattgacaacaaggctctctatgacaccttttct
gcctttggtaacatcttgtcctgtaaggtggtttgtgatgagaatggctcaaagggttat
ggttttgtgcactttgagacccaagaagcagccaacagagccattgagaccatgaacggc
atgcttctgaacgaccgcaaagtttttgtagggcattttaagtctcgtaaggaacgtatg
gcagagatgggagctaaagccatggagtttaccaatgtgtacattaagaacttcagtgag
gatattgaccgtgagaaactcaagagcatcttctctgaatttggtaagacccttagtgtc
tgtgtaatgacagatgaaagcggatgttctcgtggctttggatttgtcaactttgaaaac
cacgaagatgccaggagggcagtaaatgaaatgaatggcaaagagctgaatggcagagtc
ctgtatgtgggcagagctcagaaaagattggagcggcagggagaactcaaacgcaagttt
gagcaaataaagcaggaacgcatacaacgctaccagggggtcaatctctatgttaaaaat
cttgatgacagcattaatgatgagaatctaaggaaagagtttgcaccttatggaaccatc
accagtgcaaaggtgatgaccgatggaggccacagtagaggctttggctttgtgtgtttt
tcctctcctgaagaggctacgaaagcagtgactgagatgaatggccgtatcgttagcact
aaaccactatatgtggctcttgcccagagaaaagaggagcgaaaggcaatcctcaccaat
cagtacatacagagactagccagcattcgagccattcccagccctgccatacccaccacc
taccagcagagctccggctactacatgacctctgtgccacaacatcaggttcgctctttt
tacaacaccgtaccaaacctgcggcctgtgccacgctggacagctcaagcaccgaggact
caagctccatttacagctcagtttgtgagacaagcggtgccccgcaggccctctaccacc
attagcacagtccgccaagcctccacccaggttcctcacgttgttaacaacacccagcaa
atggccaacattggcacacagactgcaggtggaagaactgcaggggctggagctgtagtc
agaggagtcagtcaatacaaatactccgcaggagtgcgaaatgtgcagcaggtcattaat
gctccatcttctgccatccaccaggtagtacagaatacagagccggcggttcatgtgaga
ggccaggagtcccttactgcctcaatgctggcggctgcaccattaaaggagcagaaacaa
cttctaggtgagcggctgtatccacttatccaggctttgtatccgactcttgcgggaaag
attacaggcatgctgctggagatcgacaactctgaactactgcacatgctcgagactcca
gagtccctgcactccaaggttgaagaggctgtagctgttcttcaggctcatcaagccaag
gaactgtctgaaaagtaa
DBGET
integrated database retrieval system
