Carassius gibelio (silver crucian carp): 128018735
Help
Entry
128018735 CDS
T08819
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128018735
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128018735
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
128018735
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128018735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
128018735
NCBI-ProteinID:
XP_052460422
LinkDB
All DBs
Position
A8:complement(18312841..18332796)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGGCIQDGQQYADRAVWKPEACRVCV
CDAGAVLCDEVICEDLKDCTNPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGDQGTRGEKGPKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAAMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGPA
GALGPRGPPGPPGKPGSDGEAGKPGKAGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGEAGSNGESGTPGPMGPRGLPGERGRSGSSGSAGARGNDGLPGPAGSP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGQRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGSTGPLGPKGQSGDPGMPGFKGEAGPKGELGVV
GPQGAPGPSGEEGKRGPRGEPGSAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGTTGDPGRSGESGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGINGEPGKPGEKGLVGRPGLRGLPGKDGETGAAGPPGPAGVAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGIPGEGGAAGPTGPRGERGFPGERGSAGTQGAQ
GPRGLPGTPGTDGPKGAIGPAGAPGAQGTSGLQGMPGERGVVGIPGAKGDRGDTGEKGPE
GASGKDGSRGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGELGEAGQKGEAGSLGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPAGPAGPPGKDGPKGARGDAGIPGSQGDPGLRGPPGNHGEK
GMAGADGPPGADGPSGPSGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGSAGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPVGKQGDRGENGPQGPAGPPGLAGARGIVGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGAPGDQGAAGPSGPSGAKGPAGPVGPAGKDGNNGQPGPIGPPGPRGRSGET
GPVGPPGNTGPPGPPGPPGPGIDMSAFAGFPRSEKGPDPMRYMRADEASSSLRQHDVEVD
ATLKTINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSSVDAIKVFCN
METGETCVKPITPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTSSTTSVQLN
FLRLLSTEATQTLTYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGLDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatctcttgtaagatgtcaacaagaagatgaccaggaagactttgggggctgcatccaa
gatggccagcagtatgcagaccgtgcagtatggaagccagaagcgtgccgtgtctgtgtg
tgtgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgaaagactgtacc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacccccaggagaccagggaacacgtggcgag
aaaggacctaagggtgagaagggtgctcccggaccaagggggagagatggcgagcctggg
acacctggaaacccaggaccccctggacccccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctgcgatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctccgggcccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacctggccctgct
ggtgcccttggaccccgtggcccaccggggccccctggaaaacctggaagtgatggtgag
gctggcaaacctggtaaggctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccctggaacccctggcctacctggcatcaagggacacagaggacacccgggtctggat
ggagctaaaggagaggctggtgctgcaggtgctaagggtgaagctggttctaatggtgag
agcggtactcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgttctggg
tcttctggttctgctggtgcccgtggtaatgatggtctgcctggtcctgctggttctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggttctaagggtgaa
gcaggtcccactggagctcgtggacctgagggtgcacaaggacaacgtggagaggccggt
acacctggatcacctggacccgccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgctcctggcatcgctggtgcccctggtttcccaggaccc
cgtggcccgccaggacctcagggatctactggacctcttgggccaaaaggacaatctgga
gaccctggtatgccaggatttaaaggcgaggctggacccaagggagagcttggtgttgta
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggaccaaatggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtctagctggagcaaagggagctcctggtgatcgtggtgtgcca
ggtttgaccgggccaaaaggaacaactggagatcctggtcgctcaggcgagtctggtctt
cctggagctagaggtctcactggacgccctggtgatgctggacctcaaggaaaagttgga
ccaactggtgcccctggtgaagatggacgccctggtcctccagggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggaccgaagggaatcaatggtgaacctggaaaa
cctggtgagaaaggacttgttggacgccccggtcttagaggtttgcctggaaaagatgga
gagactggagctgctggtccacctggccctgccggtgtagctggtgagagaggagagcag
ggtcagcctggtccatctggcttccagggtcttccaggacccactggagcccctggagag
cctggtaaacctggtgaccagggtattcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaagtgctggcactcagggtgcccag
ggaccaagaggacttccaggaactcccggaaccgatggacctaagggtgcaattggacca
gctggcgctccaggagctcagggcacttctggcctccagggcatgcctggtgagcgagga
gttgttggaatccctggagctaaaggtgacagaggtgacaccggagagaaaggacctgaa
ggtgcttctggcaaagatggttcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggctcaattggtgcccctggt
gctcgcggtgcccctggtgatcgtggtgagattggtgcacctggacctgctggatttgct
ggacctcctggagctgatggccagcctggaattaagggagagcttggtgaagcaggacag
aaaggtgaggctggatcccttggaccccaaggaccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaagggagcacgcggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagtcggatcacctggccccaatggtaatcctggtcct
gctggccccgcaggtcctcctggtaaagatggtcctaagggagctcgtggtgatgccggt
atcccaggcagtcaaggagatcctggactgcgtggaccacctggtaatcatggagagaag
ggaatggctggagcagatggtcctcctggtgctgatggtccctccggcccttctggtctt
gctggtacgcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagcctggtaaacagggatcttctggctctgctggtgaccgt
ggacctcctggccctgttggaccacctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgacggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccgatcggtgctcctggagctcctggtgcacctggtgcccct
ggttccgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggactcgctggagctagaggcattgttggacctcaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtctgaagggacacagaggattcacc
ggtctgcagggtctgcctggacctcctggtgctcctggagaccagggtgctgctggacct
tctggacctagtggcgctaaaggacctgcaggacctgttggaccagctggtaaggacggt
aataatggtcagcctggacccattggaccacctggacctcgtggacgttctggagagact
ggcccagttggtccacctggtaacactggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttccctcggtctgagaagggacccgatcctatg
cgttacatgcgtgctgacgaggcctccagctctctaagacaacatgatgtggaggtggac
gccacactgaagacaatcaacagccagattgaggacatccgcagcccagatggctcccgc
aagaaccctgcacgctcctgcagagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcctaaccttggtagcagtgttgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccatcactcccaaaatcccacgcaagaactgg
tggagcagcaagagcaaagcgcagaagcacgtgtggtttggagagagcatgaacggtgga
ttccacttcagctatgctgatagcagccagacttctagtactaccagcgtccagctgaac
ttcctcagactgctgtctactgaggccactcagaccctcacctaccactgcaagaacagt
gttgcttacatggaccaagccacaggcaacctgaagaaggccattctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcctatcgtggacattgctcccatggacatcggaggagcagatcaggag
tttggcctagacgttggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
