Carassius gibelio (silver crucian carp): 128018969
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Entry
128018969 CDS
T08819
Name
(RefSeq) histone deacetylase 6-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
128018969
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128018969
04131 Membrane trafficking [BR:
cgib04131
]
128018969
03036 Chromosome and associated proteins [BR:
cgib03036
]
128018969
Enzymes [BR:
cgib01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128018969
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128018969
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128018969
Membrane trafficking [BR:
cgib04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128018969
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128018969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
128018969
NCBI-ProteinID:
XP_052460857
LinkDB
All DBs
Position
A8:24419806..24433029
Genome browser
AA seq
1085 aa
AA seq
DB search
MDPAPGSKGSVRSPRGTSETKRENINPNQKKNLQEARRKGRMDRSKEEEEMSNELRNMDV
RGKTKATGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLRGRCVQVEARAVS
EAELLLIHTKEYVELMKSTKNMTEEELKTLAHKYDSVYLHPEFFASACLAVGSVLQLVDK
VMTAQLRNGFSINRPPGHHAQADKMNGYCMFNNLAIAACYAQKQHGVKRVLIVDWDVHHG
QGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGPGQGYNINLPWNKIGMEDG
DYITAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDQKGEMRVSPQCFSILTHMLKGVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGAPSESALKSISETISALYPFWKS
LQTFEGGPLSDVTPRPAPVCAEVKVSSPVTGLVYDKRMMLHHNMWDRCHPELPKRISRIF
CRHEELGLVSRCLQIPARLATEEELALCHSSKHISTIKSTEHMKPRDLDRLGNDYNSIYI
CNDSYTCALMAAGSCFNSVQAIITGQVRNGVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITHESLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGSFFPSSEDANYDKV
GLGKGTGYNVNIPWNGGKMGDPEYMAAFHHIVMPIAREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLPP
LKTSATVTINNVLRVHAPFWRSLRIQIPESLRLAVLFPKSKDKRESVGTSKKSPRQSTPA
QSPGQTPQHLEQSGLDELSKDLLSLNLNTSTSSNPSPASVPIGGARRKVKPNPQRDSADR
ESDSPLKLTSEKARAGDGTHAEITAVKVETPDRTIPESVDDQESSVLEAAGGHATMMSVL
GSACRAQATDLDTMYVVDPLTWCPHLESVRPVPAGGIDVFLPCEECGGDTENWICLFCYK
VLCGRYVKQHMVTHGQVSGHPMVLSFSDLSVWCYACESYVHNKVLHEAKSAAHLVKFGEE
IPPFS
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgctccaggttccaaaggttctgttcgatcaccgagaggaacatctgaaacc
aaaagagaaaacatcaatccgaaccagaagaagaatcttcaggaggcgcggaggaagggc
agaatggatcggagtaaagaagaggaagagatgagcaatgaactcagaaatatggatgtt
cgtggtaaaactaaagcaacaggaacaggtctcgtctacgtagatgcctttactcgcttt
cactgcctctgggatgccagtcacccggagtgtccagccagagtgagcactgtgatggag
atgctggagacggaaggtctgcggggacgctgcgtacaagtagaggccagagctgtgtca
gaagctgagctgttactcatacatacgaaggagtatgtagagctgatgaagtccacaaag
aatatgacagaggaggagctgaagactctggctcataaatatgactctgtctacctgcat
cctgagtttttcgcctctgcctgtctggcggtgggatcagttctccagctggtggataaa
gtgatgacagcacagctgcgtaatggcttctccatcaacaggcctcctggtcaccacgct
caagcagataagatgaatggctactgcatgtttaataatctggccatagcagcgtgctac
gcacagaagcagcatggagttaaacgagttctgattgtggattgggatgtgcatcacgga
cagggaatccagtatattttcgaagaggatcccagtgtgctgtatttctcagtgcacaga
tatgaagacggctccttctggccacatctcaaggagtctgacagcagttcggtgggttca
ggaccaggacagggctacaatatcaacctgccctggaacaagatagggatggaggatgga
gattacatcacagctttccagcagctcctgcttccggtggcgtatgagtttcaacctcag
ctggtgttagtggcggccggctttgactctgtgatcggtgaccaaaagggtgagatgcga
gtgagtccacagtgtttctccatcctgacccacatgctgaaaggtgtagcacagggtcga
ctcgtgctggctcttgagggtggatacaacctccagtccacagcagagggtgtttgtgct
agtgtgaggtcactgctgggtgacccttgccctcacctgacctctcccggcgctccgagt
gaaagtgccctaaagtccatctcagagaccatctcagccttgtatccattttggaagagt
cttcaaacttttgagggtggtcctctctctgatgtcactccccggcccgctccagtgtgt
gcagaagtgaaggtttcctctccggtcactggactggtttacgacaagagaatgatgctt
catcacaacatgtgggaccgttgtcatccggagctccctaagagaatttctcgcatcttt
tgccggcatgaggagttgggcctggtgtcccgttgccttcagataccagctcgtctagca
acagaagaagagctggcactctgtcacagttctaagcatataagcactataaagagtaca
gagcacatgaaacccagagatctggaccgactgggaaacgattacaactctatctacatc
tgtaatgatagctacacctgcgccctgatggccgctgggtcgtgctttaactctgtacag
gccataatcacaggccaggtgagaaatggcgtggctatagtccgtcctccgggtcatcac
gcagagaaagacacggcttgtggtttctgtttctttaatacggctgctttgaccgcacgc
tatgcccagagcatcactcacgaatccctgcgtgtcctcatcctcgattgggacgttcac
catggaaacggcacgcagcacatctttgaggaggatgacagtgttctgtacatctccctg
catcgctatgaggacgggtcattcttccccagttcagaggatgctaactatgataaggtg
gggctggggaagggcacaggatacaatgttaacatcccctggaatgggggaaagatggga
gacccagaatacatggcggctttccatcacatagtgatgccgatagccagagagtttgcc
ccagagctggtgctggtgtctgctgggttcgatgcagcacgaggcgatccgttaggaggg
tatcaggtgaccccagaaggctacgctcacctcacccatcagttaatgagtctggctgca
ggaagagtgctaatcatactagaggggggatataacctcacctccatctctgagtcaatg
tccatgtgcaccagtatgttgctgggagactctcctccgtctctagaccatctgccccct
ctgaagaccagcgccactgttaccattaacaatgtcttgcgcgtacacgcccccttttgg
agatccttgagaatacagattccagagtcacttcgtttggctgtgctgtttcctaaatca
aaagacaagcgggaatcggtgggcacgagcaagaaatctcctcgccagtccacccctgcc
cagagtcctggacagacaccgcagcacctcgagcagtctggccttgatgagctcagtaag
gacctgctctctctgaatctcaacacaagtacctcatctaaccccagcccagcgtctgtc
cccattggaggagccagacggaaggtgaaacccaacccacagagggattcagcagaccgg
gagtcagattcacccctaaaactcacatcagagaaagccagagctggagatggcacgcat
gcagagattacagctgtaaaagttgagacacctgaccggacaatcccagaatccgtggat
gaccaggagagttcagtgctggaagccgctggtggccacgccactatgatgtcagtctta
ggaagtgcctgcagagcacaagccacggatttggacaccatgtatgtggtggacccgctg
acatggtgcccacacttggagtcagtgcgaccggtgcctgcaggtggcatcgatgtcttc
ctgccgtgtgaagagtgtggaggcgatacagaaaactggatctgtctcttctgctacaag
gtgctctgtgggcgttatgtgaagcagcacatggtgacccacgggcaggtgtcgggtcac
ccaatggtgctgagcttctctgacctttctgtctggtgctacgcttgtgagtcatacgtc
cacaacaaggtgctccatgaagccaaaagtgccgctcaccttgtgaagtttggagaggag
attcctcctttcagctaa
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integrated database retrieval system
