Carassius gibelio (silver crucian carp): 128020058
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Entry
128020058 CDS
T08819
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128020058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128020058
03036 Chromosome and associated proteins [BR:
cgib03036
]
128020058
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128020058
Coactivators
SAGA/TFTC/STAGA complex
128020058
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128020058
STAGA complex
128020058
TFTC complex
128020058
SAGA complex
128020058
SLIK complex
128020058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
WDR55
TFIID_NTD2
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_SCAP
RMC1_N
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF4
Tricorn_2nd
Beta-prop_SPT8
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IP5PC_F
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_VPS8
PROPPIN
WD40_like
Nbas_N
Mala_s_1-like
TRIP13_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
128020058
NCBI-ProteinID:
XP_052462559
LinkDB
All DBs
Position
A1:37068876..37075200
Genome browser
AA seq
603 aa
AA seq
DB search
MKRVRTEQIQYAVTQYLKRRQYIDTDGSLKGAKLSQSAEEMAASLTVQTESSSVNVVSAA
PCQSDPQQYETQFSRLRCFLQEAEAPLVKEVSGVLFPLFLYLHLDMARCGLKGTVDSFYS
RFHSFFQQDPEQKAIVDLLRGVVTPQDVSSNPKLCSLLDHKYVVHLTDQAYSYLLRYLQS
DDNSAICWVLSSHVQVEVTAAHRTDYQLYGAGTGAGNTTSTSSSSTAWTAGDGAEGAERV
EVTAGLAQNEVALEALQDCIKRVREGPPSLTTVCFYAFQHTDQQLNTAEVSPDSRLLAAG
FDNSAVKLWSLRARKLKAGPHRVDVSKIRLACDVLEEEADDEDASGSEIKTLRAHSGPVY
RTAFLTDGSGLLSCSEDSTVRFWDLNSFTNTVLYRGHAYPVWDVDVSPCSLYFSTASHDR
TARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASVRLFTG
HRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLFKDLRGHTDSITSLSFSQDSSLVA
SASMDNSVRVWDIRSAHGTAPTDGSSSELIGQYTGSTSNILNVQFMACNLLLVTGTALEK
QEQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcggaccgagcagatccagtacgcagtgacccagtacctgaagaggagg
cagtatatagacacagatgggtctctgaagggggccaaactctcccagtctgctgaggag
atggcagccagtctgacagttcagacggagtccagctctgtgaacgtggtgtcagcagcc
ccgtgtcagtcagacccgcagcagtacgagacccagttctccagactgcgctgcttcctg
caggaagcagaagcaccgttagtgaaggaggtgagcggcgtcttgttcccgctcttcctc
tacctgcacctggacatggcgcgctgtggcctaaaggggacggtggactccttctacagt
cgcttccactcattcttccagcaggaccctgagcaaaaagccatcgtagacctgctacga
ggagtcgtcacgcctcaggatgtgagctcaaaccctaagctctgctcgctcctggatcac
aagtatgtggtgcacctgacggatcaagcgtacagctacctgctgcgttacctgcagagc
gatgacaacagcgccatctgctgggtgctcagctcacacgtgcaggtggaggtgacagca
gcgcaccgaaccgactaccagctgtacggcgcaggcacaggagcaggaaacactacctcc
acttcctcttcctccactgcatggactgcgggggatggggcggagggggcggagcgtgtg
gaggtcacggcagggttagctcagaacgaggtggcgctggaggcgctgcaggactgcata
aagcgcgtgcgagaaggtccgccttcgctcaccaccgtctgcttctacgccttccagcac
acggatcagcagctgaacacggccgaggtgtcaccggacagccgcttgctggcggccggc
ttcgataactcagccgtgaagctgtggagtctgcgggccaggaagctgaaggcaggacct
cacagggtcgacgtgtctaaaataagactggcctgtgatgtgctggaggaggaggcagat
gatgaggatgcctcgggcagtgagataaagaccctgcgcgctcacagcggtccggtgtac
cgcacggcgttcctgacggacggctccggcctgctgtcctgttcggaggactccaccgtt
cgcttctgggacctgaacagcttcaccaatacagtcctgtaccgtggccacgcttacccc
gtctgggacgtggacgtcagtccctgcagcctgtacttctccacggcgtcccacgaccgc
acggctcgcctctggagcttcgcgcgcacctatcctctgcgtctgtacgccggacacctc
tctgacgtcgactgtgtcaaattccaccccaactccaactacgtggcgacgggctccacg
gataaaaccgtacgcctgtggagcacgcagcagggggcgtctgtgaggctgttcacgggg
caccgcggacccgtgctgtcgctcgccttctcacccaacggtaagtacctggcgtcggcc
ggagaggaccagagactgaagctgtgggacctggcgtccggcaccctgttcaaagacctg
cggggtcacaccgacagcatcaccagcctctccttcagccaggacagcagtctggtggcc
tccgcctccatggacaactctgtgcgggtgtgggacatccgcagcgcccacggcaccgcc
cccaccgacggctccagcagcgagctgatcggacagtacacgggcagcactagcaacatc
ctcaatgtgcagttcatggcctgtaacctgctgctggtgacaggcacggcgctggagaaa
caggaacagtga
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