Carassius gibelio (silver crucian carp): 128020236
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Entry
128020236 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128020236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
128020236
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128020236
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128020236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
TRIM_CC
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
zf-C3HC4_3
PRY
zf-RING_2
zf-RING_5
DUF4998
Ig_J
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
128020236
NCBI-ProteinID:
XP_052462977
LinkDB
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Position
A9:25649286..25672590
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AA seq
672 aa
AA seq
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MDTLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCPSFDESSKPFSAFQCPSC
RYVITLDQQGLDGLKRNVTLQNIIDRFQKASLSGPNSPTETRRCNPPPVDDDRVMSSPSE
AVQCQFCEQDPPQEAVKTCVTCEVSYCQECLRATHPNKKPFTGHRLTEPVPDSRLRGLAC
PEHGEEKVNMYCVTDDQLICSLCKLVGHHREHQVAALGERFDKLKQMLDSNLSNLMKRNS
ELENLMAKLIQTCQHVEHNAAHQENKLTEECDTLINIVQQRRQIISTKIKEGKVVRLRKL
AQQIASCKQFVERSSSLIAQADQVLKETDHARFLQTAKSVSERVSMATASSQILIPEINL
NDAFDGFALDFSREKKMLEALDYLTAPNAPNIREELCTASHDTITVHWSSEDEFSVVSYE
LQYTISTGQTNVVSLCNSMESWMIVPNIKQNHYTVHGLQSGTRYIFMVKALNQAGSRGSP
PAKLKTNSQPFKLDPKSAHRKLKVSHDSLTVERDEASSMKSHAQDRFGSSGNYGVPGNVF
IDSGRHYWEVLIGGSTWFAIGIAYKSAPKHGWVGKDSASWVLSRCNTSWAVRHNSKEFPI
EPSPHMRRLGVLLDYDLGSLAFYDAAGTQHLHTFDIAFSQPICPVFSVWNKCLTVLTGLP
IPDHLEISDPRD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcggagttgacttgtccaatctgtctggagcttttcgaggatcct
cttctgctgccttgcgcccacagcctgtgctttaactgcgctcaccgtattctggtgtcc
cactgtccctcgttcgacgagtccagcaaaccgttctctgcgttccagtgtcccagctgt
cgctatgtcatcaccctcgaccagcagggactagacggcctcaagcgcaacgtcactttg
cagaacatcatcgaccgcttccagaaggcgtctctgagcggcccgaactctccgaccgag
acgcgtcgctgcaatcctccgccggtggatgacgacagggtcatgagttcaccgagcgaa
gccgtccagtgccagttctgtgagcaggacccgccgcaggaggcggtcaagacctgcgtc
acctgcgaggtttcgtattgtcaggaatgcctgcgtgcgactcacccgaacaagaagccg
tttacgggacaccggctcacggagcctgtaccggactctcggctccgaggactggcctgt
cccgagcacggagaggagaaggtcaacatgtactgcgtgacggacgatcagctgatttgc
tcgctgtgcaaactggtcgggcatcaccgtgaacaccaggtggcagcactgggagagcga
ttcgacaagctgaagcaaatgttggattcgaacctcagcaatctgatgaagaggaacagt
gagctggagaacctgatggcgaagctgatccagacgtgtcaacatgtggagcacaatgca
gctcatcaggagaacaaactgacagaagagtgtgacacgctgataaacatcgtccagcag
agaagacaaatcatcagcaccaagatcaaagaaggaaaggtggtccgcttgagaaagctg
gctcagcagatcgctagctgtaagcagttcgtggagagatcgtcctcgctcatcgctcaa
gccgatcaggttctgaaagagacggaccacgctcgattcctgcagaccgccaagagcgtc
tcggagcgagtgtcgatggcgacggcgtcctcacagatcctgatcccagagatcaacctc
aacgacgcgttcgacgggttcgcactggacttttccagagagaagaagatgctggaggct
ctggattacctgaccgctccgaacgctcctaacatccgcgaggagctctgcacagcgtct
cacgacaccatcacagtccactggagctcagaggacgagttcagcgtggtctcgtacgag
ctgcagtacaccatctccaccggacagaccaacgtcgtcagtctgtgtaactcgatggag
agctggatgatcgtgcccaacatcaagcagaaccactacacggtccacggcctgcagagc
ggcaccaggtacatcttcatggtgaaggccctgaatcaggctgggagccgcggcagtcct
ccggccaaactcaagaccaacagtcagccgttcaagctggacccaaagtcggcccacagg
aagctgaaggtgtcccacgacagtctgacggtggagcgggacgaagcctcgtcgatgaag
agccacgctcaggaccgcttcggcagctcggggaactacggcgtgccggggaacgtgttc
atcgacagcggcagacattactgggaggttctgatcggaggaagcacatggtttgctatc
gggatcgcctacaaatcggctcccaagcacggctgggtggggaaggactcggcatcatgg
gtcctgagccgctgtaacacctcgtgggccgtgcgtcacaacagtaaggagttccccatc
gagccgtctcctcacatgcggcgtctgggcgtcctgctcgactacgacctcggctcgctg
gcattctacgacgccgctggaacgcagcacctgcacaccttcgacatcgccttctctcag
cccatctgtcccgtcttcagcgtctggaacaagtgtctgaccgtcctcaccgggctcccc
atcccagaccacttagagatcagcgacccgcgcgactga
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