Carassius gibelio (silver crucian carp): 128020414
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Entry
128020414 CDS
T08819
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib02010
ABC transporters
cgib04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128020414
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128020414
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cgib02000
]
128020414
Transporters [BR:
cgib02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128020414
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
DUF7447
Motif
Other DBs
NCBI-GeneID:
128020414
NCBI-ProteinID:
XP_052463155
LinkDB
All DBs
Position
A1:complement(37678366..37711166)
Genome browser
AA seq
2268 aa
AA seq
DB search
MAVSTQLGLLLWKNFTSRRRQTVQLLIEIIWPLFIFFILISVRFHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFIDAKKILLYSQHDK
SFEGFKVLVRALRKLQRNTEGFKLKDFLHDNETLSAFLEKNATLPKHAVRQIVEANVNLE
KVLINGFGVHLRDLCNTTSLEDFVTIADKDVSQLTQNIICQSSAEWLNNAESHFLSNLDF
LKPIRKDVKSDPKIIQDVSIATDSLLESLGALAVELVSMKSWRDMRNEIQYLTGNSTQSP
KHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNYGNDSDSEPVSVYDNSSTPYC
NSMMKGLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIQEVNKTFQEFGVLRDLGGM
WEEMRPKIWDFMENSEEMDLVRTLLQNNASARFFNAKLSGTDWRVEDVSSFLSKSPEDTR
PHGSAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRKFWAGI
VFPDMQANTSDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYL
QDVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLDNGTLWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPG
VVYLFLASFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGAK
VVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYSLTTSISLMLFDSVLYA
LMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKCGGISSMPTNKKENAEAVCIEEEPAHL
EPGVYIENLVKVYSNGKLAVDDLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIQGKDIRTNLNTIRQNLGMCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEMEQIV
MDLGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDFDL
SASSCRTSSSTVSYSKGSLKKEDSVSESSSDAGLGSDHESETATIDVSLISNVIFKHVPT
ARLVEDLGHEITYVLPYESAKDGAFVELFHEIDDRLTDLGISSYGISDTTLEEIFLKVAE
DNGVDVEISDGIIPARRNRRHAFGDHQSCLKPFTEDDFDLNDSEGDPESRETDWLGGADG
KGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALGFSLIVPPFGK
YPSLALEPSMYGEQFSFVSNDAPEDRHTNKLLEALMDNPAYSEQCKDEQNTGSKSCAIKD
GEWMVPEVPESVQDIFLKGNWSMENPSPVCECSCEERKKMLPECPPGAGGLPPPQIKVTV
NETLQNLTGKNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGARSSQALPPGDEITD
AISHIRKRFSLQAGTAADRFLASLSIFIRGLDTKNNVKIWFNNKGWHSIGGFLNVMNNAV
LRANVPPGLDRSKFGIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFV
VFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQEAYVSST
NLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGS
NEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMAEALERFGENRFRSPLAWDMVGKNL
FAMALEGAIFFCITILIQYRFCIKARPFSTKLTAIGEEDEDVARERQRILSGGGHTDILE
LKQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLA
GKSVLTEIDEVHQNMGYCPQFDAISDLLTGREHLEFYAILRGIPEKEVCEVADWGIRKLG
LMKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKE
GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNKFGDGYTIILRVAGADPQLE
PVMEFIEKELPGSTLKEKHRNMLQYQLPSSLTSLARIFNILSKNKEQLHIEDYSISQTTL
DQVFFNFAKDQSDEDHLKDIAINKNDAVVDISHLNAFLVDEKAKETVV
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccactcagttgggtttgctgctgtggaagaacttcacttcccgacggaga
cagactgttcagctgctgatcgagatcatatggccacttttcatctttttcatcttgata
tctgtcagattccactatcctccatacgagcaacatgaatgccactttcccaataaagcc
atgccctctgcggggactttaccttgggtacagggtataatctgcaacgccaacaaccct
tgctttcgctaccccacgcctggagagacccccggggtggtgggcaacttcaatgactcc
atcatctcccgactgttcatcgatgccaagaaaattctcctctacagccaacatgacaag
agcttcgaaggtttcaaagtactcgtccgggccttgcgaaaactgcagagaaacactgaa
gggttcaagctgaaggacttcctccatgataatgaaacgctgtctgcgtttcttgagaaa
aacgctaccctgcccaagcatgctgtgagacagatagtggaggctaacgtcaacttggag
aaggtgcttattaacggctttggcgttcatctcagagacctgtgcaataccacctctctg
gaggattttgtgaccattgcagataaggatgtgtctcagctgacgcaaaacatcatctgt
caatcgtctgctgaatggctgaacaatgcagagagccacttcctgtccaacttggacttc
ctgaagccaatacggaaggatgtcaagtccgacccaaagattatccaagatgtgtccata
gcaacagacagtctcctggagagtttgggagcattagcggtggagcttgtgagtatgaag
agctggcgggacatgcgcaacgagatccagtacctgacgggcaacagcacgcagtccccc
aagcacatgtatcaggccgtgtcccgcatcgtctgcggtcacccggagggcggaggcctg
aagatcaagtccctcaactggtacgaggacaacaactacaaggccctgttcgggaactac
ggcaatgacagcgacagcgagcccgtctccgtctacgacaactcctccacgccctactgc
aacagcatgatgaagggcctggagtcgagtcccatatcccgcatgatctggagggctctg
aagccgctgctcatggggaagatcctgtacaccccagacactcctgccacccagaggatc
atacaagaggttaataagacgtttcaggagttcggcgtgcttagggatctcggcggcatg
tgggaagagatgagacctaaaatctgggactttatggagaacagtgaggagatggacctc
gttcggacccttctccagaacaatgccagtgctcgcttctttaacgccaagctgagcggg
acagactggcgcgtggaggatgtgtccagctttctgtccaagtctccagaggacacgcgt
ccccatgggtcagcgtacacatggcgggaagtgttcaatgagacggatcaggccatccaa
accatctctcggttcatggagtgtgtgaacttggataagttggagccggtggctaatgag
gagcgactggttaacaagtccatgcgtctgctggatgaccgcaagttttgggctgggata
gtgtttcctgacatgcaggccaacacgtctgacctgccgcctaacgtcaactacaagatc
cgcatggacattgataatgtggagcgcaccaacaagatcaaggatgggtactgggatccc
ggtcctcgagcggacccgtttgaagacctgcgctatatttggggaggattctcctacctg
caggacgtgattgaacacgggatcatacgagctctgaccggcagcaaggagaaaaccgga
gtttacatccagcagatgccttatccctgctatgtggacgacattttcctgcgggtaatg
agccgctccatgcctctgttcatgactctggcctggatgtactcggtggccatcatcatt
aagggtgtggtgtacgagaaggaagcccggctcaaggagaccatgaggattatgggtttg
gataatggcaccttgtggctgagctggttcatcagtagtctgatcccactgctcatcagc
gccgccctgctggtgctcatcctgaagatggggaatctcttgccgtacagtgatcctggt
gtagtctacttgttcctggcctcgtttgcggtggtgaccatcatgcagtgtttcttgatc
agcacgctcttctcccgcgctaacctcgccgcggcctgcgggggcatcatatacttcacc
ctctatcttccctatgtgctttgcgtggcctggcaggattacatcggctttggcgccaaa
gtagtagtgagcctcttgtctccggtggcgttcggcttcggctgcgagtactttgctctg
ttcgaggagcagggagtgggcatccagtggagtaacctgctgtccagccccatgcaggag
gacagctacagtctcaccacatccatctcgctcatgctcttcgattctgtactgtacgcc
ctcatgacctggtacattgaagctgtgtttccaggtcaatatggcatcccacgaccctgg
tatttccctttcaccaagtcatactggtgcggagagaaatgtggggggatttcatcaatg
ccgaccaacaagaaagaaaatgctgaagctgtatgcattgaagaagaaccagcccatctg
gaaccaggtgtttacatcgagaacctggtgaaggtttacagcaacggcaaactagcggtg
gacgatttgacgctgggtttttatgagggtcagatcacctccttcctggggcacaacggt
gctgggaaaaccacaaccatgtctatcctcactggcctgtttcctcccacctcgggcacc
gcttacatccagggcaaagatatccgcaccaatctgaacactattcgtcaaaacctgggc
atgtgtccgcagcacaacgtcctgtttagcatgctcaccgtggaggagcacatctggttt
tacgcacgtctgaagggtttgtctgaggagaaggtgaaatcagagatggagcagatcgtg
atggacctcggcctgcctcataaacgcaaatctcgaaccagccagctctcaggaggaatg
cagaggaagttatcagtagcgctggcatttgttggagggtcaaaggtcgtgatcctggat
gagcccacagctggagtcgatccttacgctcgccggggaatctgggacctactgctgaag
tatcgtcaaggacgcaccatcatcctctccacccaccacatggatgaagctgatatcctg
ggcgatcgcattgctatcatctcccacgggaagctgtgctgtgtgggctcctctctgttc
ctcaagacccagctggggacgggatattacctgacgctggtgaagaaggacttcgatctc
tcggccagctcctgccgcacctccagcagcaccgtctcctactccaaaggaagtctcaag
aaggaggacagtgtatccgagagcagttctgatgctggattgggcagcgaccatgaaagc
gaaaccgccaccatagatgtctccctgatctccaatgtgattttcaagcacgttcctaca
gccagactggttgaagacctcgggcacgagatcacttacgttctgccttacgagtcggcc
aaagacggagcgtttgtggagctcttccatgagatcgacgaccgcctcactgacctcggt
atttctagctacggcatctctgacacaaccctggaggagattttcctcaaggtggcagag
gacaatggtgttgatgtggagatatcagatgggattatacccgcacgcaggaaccgcaga
catgctttcggtgaccatcagagctgcctgaagcctttcactgaagacgactttgacctc
aatgactctgaaggtgatccagaatctcgtgagacggactggctgggcggcgctgatggg
aaaggctcgtaccaggtgaagggctggagtctgaagagacagcagtttgtagctctgctc
tggaaacgcttcctgtacgcccgacgctcccggaaaggtttctttgctcagattgtgctt
cccgctgtgttcgtgtgcatcgcactggggttcagtctcattgtccctccattcggaaag
tatcccagtctcgctctggagcccagcatgtatggagagcagttctccttcgtcagcaat
gatgcgcctgaggacagacacacaaacaagttactcgaagctctgatggacaatccggct
tacagcgaacaatgcaaagatgagcaaaacactggtagcaaatcatgcgcgattaaagat
ggagagtggatggttccagaggttcctgagagcgttcaggacatattcctaaaagggaac
tggagtatggaaaacccatcgcctgtgtgtgagtgcagttgtgaagaaaggaaaaagatg
cttccggagtgtcctccaggagcaggtggtctgccaccgcctcagatcaaagtcaccgtt
aatgaaaccttgcagaatctgacaggcaaaaacatttcagactacttggtcaaaacctat
gcacagattattgggaaaagcttgaagaacaagctctgggtcaacgaattcaggtatggt
ggattctcattgggtgcgagaagttcacaggccctcccccctggtgatgagatcaccgat
gccatctctcacattcgtaaacgcttcagtcttcaagcgggaaccgcagctgaccgcttt
ctggccagcctgtcgatttttatccggggtctcgataccaagaacaatgtgaagatctgg
ttcaataacaagggctggcacagtatcggagggttcctcaatgtcatgaacaatgccgtc
ctgcgtgctaatgtgccccccggcctggatcggtccaaattcggcatcaaagcgttcaac
catccgctcaacctcaccaaagagcagctctcacaggtggcactaatgacgacctcagtc
gacgtgctggtgtccatctgcgtcatcttcgccatgtcctttgtcccggccagctttgtg
gtgttcctcatccaggagagagtgaataaagccaaacacatgcagttcatcagtggagtg
cagcctttcctctactggctggccaactttgtgtgggacatgtgcaactacattgtccca
gcgaccctggtcatcatcatcttcgtctgtttccagcaagaggcctacgtgtcctctacc
aatcttcctgttctcgccctcctgctgttgctctatgggtggtccataacacccctgatg
tacccagcatcattcttctttaagattcccagtacagcgtatgtggttttgaccagcgtg
aacatcctcattggaataaatggcagcgtatccacgtttgtcctggagcttttcggaagc
aacgagattggtggcatcaacgacatcttgaagaacgtgttcctgatcttccctcacttc
tgtctgggcagaggactcattgacatggtgaagaaccaagctatggctgaagctctggag
agatttggtgagaaccgattccgctctcctctggcgtgggacatggtgggcaagaatctc
tttgccatggccttagagggtgcgattttcttctgcatcaccatccttatccagtaccgt
ttctgcatcaaggccaggccgttcagcactaagctgacagcgatcggagaggaggacgag
gatgtggccagagagagacagaggatcttaagcggaggaggacacactgatatcttggag
ctcaaacagctcaccaaggtttataagcgaaagcagaagccagctgtagacagactgtgt
gtgggcatcccaccgggagagtgttttgggctgctcggcgtgaacggagctggaaagaca
agcaccttcaaaatgctgacaggagattctgttgtcactagcggcgaggcctacttggca
ggaaagagcgtgctgacggagatcgatgaagtgcatcagaatatgggctactgtccgcag
tttgacgccatcagtgatctgctgactggtcgagaacatctggagttttacgccattctg
cggggcatcccagagaaggaagtgtgcgaggtggcagattggggcattcgtaaactaggc
ctgatgaagtacgtagacaaagcagcaggaagctacagcgggggaaacatgaggaagctc
tccaccgctatggcactcatcggaggaccgccagtggtgttcttggacgaacccaccact
gggatggaccccaaagcccggcgggccctgtggaactgcatcctcagcatcattaaagag
ggacgctcggtcgtcctgacctcacacagtatggaggagtgtgaggcgctctgcactcgt
atggccatcatggtgaacggcaggttccgctgtctgggcagtgtgcagcacttaaagaac
aagttcggtgacgggtacaccatcatcctgcgggtggcgggggccgatccgcagctggag
ccggtgatggagttcatcgagaaggagctgccgggcagcacgctgaaggagaagcacagg
aacatgctgcagtaccagctgccctcgtcgctgacatccctcgcccgcatcttcaacatc
ctctccaagaacaaagagcagctccacatcgaggactactccatctcacagaccacttta
gaccaagtatttttcaattttgccaaggaccaaagtgacgaggaccacttaaaagacatt
gccattaataaaaacgatgccgttgtggacatttctcacctgaacgccttcctcgtagac
gagaaggccaaagagacggtggtgtga
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integrated database retrieval system
