Carassius gibelio (silver crucian carp): 128020466
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Entry
128020466 CDS
T08819
Name
(RefSeq) aprataxin isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128020466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128020466
Enzymes [BR:
cgib01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
128020466
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
128020466
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
128020466
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
128020466
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128020466
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
FHA
DUF6480
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
128020466
NCBI-ProteinID:
XP_052463159
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All DBs
Position
A1:37662833..37667110
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AA seq
347 aa
AA seq
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MPVCLLVSEDDSHKPIQLHHQQSVTLGRGPETKIKDKKCSREQVELRADCSRGFITVKQL
GVNPTSVDDVVVGKGNQVTIKPGQRLYIVNQQYPYRVKFTEDTSTPRSTGDLSKPSKRPH
QMSSEGNGEKIRSPANTSSTPRTDQHRMSDGSPPPKQTPPAESHKSGSAGHWSQGLKVSM
QDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWDSISSLKALRSEHMELLKHMQRVGDQMV
QQCPDAHKLSFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFVESQDVIA
MLEHDGKVTVKEGTNELLKLPLRCHLCHKEQPTIPKLKEHLKTHLPS
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtgtttgctggtaagtgaagatgattcacataaacccattcagctacatcac
caacagtccgtgactctgggtcgaggaccagaaaccaagatcaaagacaaaaagtgctca
agagaacaagttgagttgagagctgattgcagcagaggatttatcactgttaaacagctg
ggtgtgaatcctacaagtgtggacgatgtggttgtgggcaaaggcaatcaggtgaccata
aagccgggccagagactttacattgtcaatcagcagtatccttacagagtaaagttcact
gaggacacgtccacccccagatctactggagacttgagcaaaccttcaaagagaccccat
cagatgagctctgaggggaacggagagaagatcaggagccctgcaaacacatcatcaaca
ccccggacagaccagcacagaatgtcagacggttcacctcctccaaaacagacaccgcca
gctgaatcacataaatcaggatcggctggccattggagccaagggcttaaagtatccatg
caggaccctaagatgcaggtgtacaaagatgatcaggttgtggtcatcaaggacaagtac
ccaaaggcgcgctaccattggctggtgctgccctgggactcgatctccagtctgaaggct
ctgcgctcggagcacatggagctgctcaaacacatgcagcgtgtgggagaccagatggtg
cagcagtgccctgacgctcacaaactgagcttccgtctgggatatcacgccatccccagc
atgagtcacgtccacctgcatgtaatcagccaggactttgactcgccgtgtttgaagaac
aagaaacactggaattccttcaccactgactactttgtggagtctcaagatgtcattgcg
atgctggagcatgatgggaaagtgacggtgaaagaaggcactaatgaattgctgaagctg
cctctgcgctgtcacttgtgtcataaagagcagccgacgatacctaaactaaaagaacat
ctcaaaactcacctgccttcttaa
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