Carassius gibelio (silver crucian carp): 128022008
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Entry
128022008 CDS
T08819
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128022008
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
128022008
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgib04515
]
128022008
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128022008
Cell adhesion molecules [BR:
cgib04515
]
Cadherins
Protocadherins
128022008
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF4139
FAM176
Pox_I1
Motif
Other DBs
NCBI-GeneID:
128022008
NCBI-ProteinID:
XP_052465165
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Position
A11:2833550..2837859
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AA seq
883 aa
AA seq
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MWNTKRGTCLHSKGELWGLFILLLYTSPLSCSSNFSHLIYKIKEGLPKGTLIGAISSDLK
LDLSVNPPRSFNLELKTASQQYVNLNNTSGELFTSALEIDREALCAESHEGQGCAIFLDV
LILPQQYFQLVKIKIIIEDVNDNRPHFPVGEIRVFVPENAPVNARFAVEQSAVDPDIGIH
GVQTYWLVNDYGVFTLDVEENEGGELTPFLIITESLDRETQAEYVTDIIAEDGGTPPLLG
TATLRIIIMDVNDNCPKFTESQVNVTLYGNASKGMQLARLQAYDPDEGANALITYTFSER
VTQESRNLFHLDTNTGVLKLAGKIDNNTGKLFKLIVLANGPTCIPEVATVTIHVIKQLSG
PPVVIPRYIASEKDGVVSISESEPAFSPIALFTIKNTEPQQKIECLLEGTGPFRLVPYER
FKNEYLLETTELLDYEQQQDYEIVIVVRNSHGLVVNTVVKVHVLDVNDNAPVFKQSFIEI
TVEENNPPNTFLAQLQATDADSESRGEVYYLLGADAPTIFDLDRSTGVLTVSTSLDREEK
ETYRFMVRAIDRGTPRKESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGALT
VTDADAGENGWVALSILNGSDIFVIDTGRGALRAKTSLDREQQGTYYVWIEAIDGGEPAL
SCITMVTVLLLDVNDNPPTVLFPQSNQSYMLVLPNTLPGTSITEVYAVDRDTGMNAVIAY
SIIKRTDGEPGSFDIDPYTGNITLRKSLSNRGLYSLWVKVRDHGQPELYSTVLVNLFVNE
TVSNETLIQSLLPRSVDIDHGVLPPDKEGRKGEQVPNLCGEYQVLLLALTATCLGLFLTV
LSLVMFICCKKRKPKKKRLESEIPLNLINQEMVVKNLMEISNI
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacactaaaaggggaacctgtcttcacagcaaaggagagttatggggtttgttc
atcctcctcttgtacaccagtcccctctcctgctcgtcaaatttcagtcacctcatctat
aagataaaagaaggattacctaaagggacactcataggggctatcagttcggacttaaaa
ttggatctttccgtcaatcctcctcgctcgttcaatctggagctgaagacggccagccag
cagtacgtgaatctgaataacacgtcgggggagctgttcacatctgcgctggagattgac
agagaggctctgtgcgcggagtcccacgagggccagggctgcgcaatctttctggacgtg
ctaatccttcctcagcagtactttcagctggttaagattaaaatcattatagaggatgtg
aatgacaaccgtccgcatttccctgttggagaaatcagggtgtttgtgccggagaacgca
cctgttaacgcaaggtttgcggtggagcaatccgcagtagatcccgacatcgggattcac
ggcgttcaaacatactggcttgtaaatgactatggcgttttcacattagacgtagaggag
aacgaaggcggtgaactgacgccgtttctaatcattaccgagtctcttgatagggagacg
caagctgagtatgtgactgacattatagccgaggacggaggcactccgccgcttctaggc
actgcaactctgaggattatcatcatggacgtcaacgacaactgccctaagtttacagag
tcacaagtgaacgttacactttatggaaacgcttctaagggcatgcaactggctcgtcta
caagcctacgatcctgacgagggagccaacgccttgatcacttataccttcagcgaacgg
gtcactcaggaaagcagaaacctgtttcatttggatacaaacactggggttcttaaacta
gcgggaaagattgacaacaacaccgggaaactcttcaaactaatcgtgctggccaatggg
ccgacttgtattccagaagttgcaacggttaccattcatgtcatcaaacagctctctggc
cctccggtggttatcccacgttatattgcgtccgagaaggacggtgttgtgagtataagt
gaatcagagccagcgttttcacccattgctttgtttaccatcaaaaacacagagccacag
cagaagatagagtgtcttcttgaaggtacaggtccgtttaggcttgtaccgtatgagcgt
tttaaaaacgagtacctgcttgaaaccaccgagctattggattatgagcagcaacaggat
tatgaaattgttattgtggttcgcaactctcatggattagtagttaacactgtagtgaag
gtccatgtgctggacgttaacgacaatgctccggttttcaagcaatctttcattgaaatc
acagtggaggagaacaacccgccaaatacattcctcgctcagcttcaggccaccgatgca
gacagtgaaagcagaggcgaggtgtattacctactcggcgctgacgctcccaccattttt
gacttggatcggtcaaccggggtactgacggtgtccacttctcttgaccgagaggaaaag
gagacgtatcgtttcatggtgcgagccatagaccgtggcacgccgagaaaggagtcgatc
gccactgtgattatcaccgtccaggatcggaatgacaacagtccaaggttcatcaacaag
gacttcaccttcttcgtgccggagaactttccaggttttggggaaattggcgctcttact
gttacggatgcagacgctggggagaacggctgggtggcgttgtccattcttaacgggagc
gacatcttcgtgattgacaccggacgaggagcgctgcgggccaagacctctctggaccgg
gagcaacagggaacgtactacgtttggatcgaggcaattgacggaggcgaacctgctctc
tcttgcatcacaatggtgactgttctcctcctggatgtcaacgataaccctccaactgtt
cttttccctcagtccaaccagtcgtacatgttggtgcttcccaacacgcttccaggaacg
tctataacggaggtttacgcggtggaccgggacactggaatgaacgctgttattgcgtac
agcatcatcaagagaacggatggagagccgggctcgtttgacattgacccctacacggga
aacatcaccttgaggaaatccttaagtaatcgaggcctctacagtttgtgggttaaagtc
agggaccacggtcaaccagaactctactctaccgttctggtcaacctgtttgtgaatgag
acagtcagcaatgagaccctcattcagagtttgttgcccagaagtgtagatattgaccat
ggtgtgcttcctccagataaggaagggaggaagggcgaacaagtgccaaatctgtgtggc
gagtaccaagtgttactgcttgcactgacggctacctgcctgggattatttctgaccgtt
ttgtcgctggtgatgttcatctgctgcaagaaaaggaaaccaaaaaagaagaggttagag
agtgagattcctttaaatctcatcaaccaagaaatggtggtcaagaacctaatggaaatt
tcaaacatctga
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