Carassius gibelio (silver crucian carp): 128022340
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Entry
128022340 CDS
T08819
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
128022340
Spliceosome [BR:
cgib03041
]
Common components
Common spliceosomal components
General mRNP proteins
128022340
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RRM_5
RBD_DEAH11
RRM_7
CDC45
Motif
Other DBs
NCBI-GeneID:
128022340
NCBI-ProteinID:
XP_052465723
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All DBs
Position
A11:complement(11196751..11203681)
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AA seq
525 aa
AA seq
DB search
MADDLDIEAMLEAPYRKDDNKSLSSNGHEERSKKKKKSKSRSRSRSREKKRSRSRDRKRS
HDRRRSRSKDRKRSRSRERRRSRSRSRERGGRYKAPFSGLKFNGGPRGKTGPPPAIKLSR
RRSRSRSPFKKEKSPIRKPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDV
RIISDRNSRRSKGIAYIEFVDTTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNL
QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAE
CAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMAR
LAEGTGLQIPPAAQQALNMSGSMVAMAAATAAMNPGLSFNLNMPPNQALNLPSQPIATHC
FQLSNMFNPNSENDLGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPSIPAAM
AAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacatcgaagcaatgctcgaggctccatatagaaaggatgacaac
aagtccttaagttccaatggccacgaggagcggagcaagaagaaaaagaagagcaaaagt
cgcagcagaagccgcagtcgggaaaagaaaagaagcaggagtcgtgatcgcaagagaagc
catgaccgcaggaggagccgcagcaaagatcggaagcgcagtcgcagcagggagagacga
cgcagccgttccaggagcagggagcgtggtggtcgctacaaagctccattttctggcctg
aaatttaacggtggtcccagggggaagactggcccaccacctgccatcaaactaagccgt
agaaggtctagaagccgcagtcctttcaagaaagagaaaagccctataaggaagcccatt
gataatctcacccccgaagaaagggatgcacgcacagtgttttgcatgcagctggcagcc
aggatccggccacgagacttggaagaatttttttctgcagtgggaaaagtgcgagatgtg
agaattatctctgatagaaactctagaagatctaaaggaattgcatacattgagtttgtg
gataccacctctgtacctttggcaattggcctgtctggtcagagactactcggagtacca
atcattgtgcaggcttcacaggctgagaaaaacagagccgctgcattggccaataacttg
cagaagggcagtgctggacctatgagactttatgttggctcattgcattttaatatcaca
gaagacatgctccgaggcatctttgagccatttggaaggattgatagtattcaactgatg
atggacagtgaaacaggacgatcaaaaggatatggctttatcacattttctgatgctgaa
tgtgctaagaaggctctggaacagcttaatggctttgagttggctggcagaccaatgaaa
gtgggacatgtgacggagaggactgatgcctccactgccagctccttcctggacaacgat
gagctggaaaggacaggcattgatctgggaactactggtagacttcaactcatggccaga
ctggccgaaggtactggtctgcagatcccacctgctgcacagcaggcccttaacatgagt
ggctccatggtagccatggctgcagctactgctgctatgaaccctggattgagttttaac
ctcaatatgcccccaaaccaagcattgaatctaccatcacaaccaattgcaacgcactgt
ttccagctgtctaatatgttcaatccaaactcagaaaatgatcttggttgggaaattgag
attcaggatgatgtcattgaggagtgcaacaaacacggtggagtcatacacatatacgtg
gacaagaaatcagctgaaggtaatgtctatgtgaagtgtcccagtattcctgctgctatg
gctgctgtcagtgcgttacatggacgttggtttggaggtaaaatgatcacagcagcttat
gttcctcttcctacataccacaaccttttcccagagtcagtgcaggcaacacagcttctt
atgcccagtcgccggtga
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