Carassius gibelio (silver crucian carp): 128024906
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Entry
128024906 CDS
T08819
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128024906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128024906
03009 Ribosome biogenesis [BR:
cgib03009
]
128024906
03036 Chromosome and associated proteins [BR:
cgib03036
]
128024906
Enzymes [BR:
cgib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
128024906
Messenger RNA biogenesis [BR:
cgib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
128024906
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
90S particles
RNase
128024906
Prokaryotic type
rRNA processing factors
128024906
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
128024906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Motif
Other DBs
NCBI-GeneID:
128024906
NCBI-ProteinID:
XP_052466743
LinkDB
All DBs
Position
A12:complement(3595650..3636840)
Genome browser
AA seq
1300 aa
AA seq
DB search
MGKSQTGYNDIRMSFNAGSGWPRGRPAAPDPMYRPAPPRYQYDPPTAPGPMYNPQGGSCY
MPPRPEFMPFHFPPPSQGSNALPHCPIRPPVFPEPPPFPPLAPHSSDSSVSVPVQSSYPY
MMPTIPPPPHPPGPPSVPPPMPYPPSYPMSYPQMPQLPPPPSFNPAYVQPGGSFKPERSR
PPLQYKADSGSRSPERLRHHDEHRHSGHSYGGYGGRHNREFGGEKRDRGCSSERRSSDSP
RRKADYDRGRVPSRHRSRERYRHRDESGSSPSDRHRKHIRNRSGSRERKRRRVEEVKERR
TDSTSSSRERSVSYSRSRDAEETSTERHEEEKGEEELLKPAWIRCTHAENYYSNDPMDQM
GDSTVVGTSKLRDLYERFEEELVRRQVRAKSSRPKWEPPKTKLDQDQDDSSSESECESDG
GGSSCSSSSDSDVFDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKAKRTGIR
HSIYPGEQQVKECRPMSNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSCFS
HTPLTNIPLCQVIRFNIDYTIHFIEEMAPENYCVKGLELFSSYLFKDILELYDWNLTGPE
ENGQSGCQRFHFMPRFVRFLPDGGKEVLSMHQVLLYLLRSSTALVPEEEIANMLQWEELE
WQKYAEECKGMIVTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIRPAQLSYAGDPQ
YQKLWKSYVKLRHLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWK
SGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFKERCLLQLAMTHPSHHLNFGMN
PDHARNSLSNCGIRQPKYGDRKVHHMFMRKKGINTLINIMSRLGQDDPSPSRINHNERLE
FLGDAVVEFLTSVHLYYLFPHLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPD
LCRESDLRHAMANCFEALIGAVYIEGGLEEAKQLFGRLLFSSEELKDVWLNYPPHPLQVQ
ETLTDRQLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFL
GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRP
VALRTKTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC
LTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDAL
DKYNFPQMAHQKRFIERKYRQELKEMRREQERQERDSDEG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaagccaaacaggctataacgacataaggatgtctttcaatgctggcagtgga
tggccgaggggaagaccagcagctccggacccaatgtatcggcccgctcccccacggtat
cagtatgaccccccaactgctcccggtcccatgtataaccctcaaggtggcagttgctat
atgccaccccgtcccgaattcatgccattccatttccctccaccgtcacagggctctaat
gctcttccccattgccccatacgcccaccggtcttcccagagccacccccttttcctcca
cttgctcctcacagctcagacagctccgtttccgttccagttcagagctcttacccctac
atgatgcctaccatcccccctccaccccatccacctgggccaccctcggtgccacctccc
atgccctacccaccatcatatcccatgagctaccctcaaatgcctcagctccctcctcca
ccgagcttcaacccagcttacgtgcagcctggaggttccttcaaacctgaacgctcccgc
ccgcctctgcagtacaaggcggactccggttctcgctcacctgaaagacttcgtcaccat
gatgagcaccggcacagtggccacagctatggaggatacggaggccgacataaccgagag
tttggaggagagaaacgggacagagggtgcagttcagagcgcagaagttcagacagccca
cggcgtaaagcagactatgaccgaggacgcgtgccatcgagacaccgcagcagagaacgc
tatcggcatagagatgagtcaggttcatccccctcagacagacaccgaaaacacattcgc
aatcgctcaggcagtcgagagagaaagcgccgacgtgtggaggaggtgaaagagagaaga
acagacagcacctcaagcagtcgagagagatctgtgagctacagcaggagtagagatgca
gaggagacgtcgactgaacgtcacgaggaggagaaaggagaggaggagttactcaaacct
gcctggatccgctgtacacatgcagagaactactactcaaacgatcccatggaccaaatg
ggtgactctacagtcgtgggcactagtaagttgagagatctgtatgagcgctttgaggaa
gagcttgttcggagacaggtgcgggccaaatccagtaggcctaaatgggaaccacccaag
accaaactggaccaggatcaggatgacagctccagtgaatctgaatgtgagtctgatgga
ggcggtagcagctgctccagcagttctgactctgacgtatttgatgtcattgctgagatc
aagcggaagaaagctcatcctgaccgcctccatgaggagctgtggtacaatgaccccgga
cagatgaatgacgggccgttatgcaagtgcagtgccaaagccaagcgaaccggaatccgc
cacagtatttatcctggtgaacagcaagtgaaagagtgtcggccgatgagtaacaatgct
ggtaaactgttccactacagaataactgtgtccccacccaccaacttcctaacagataga
cccacggttattgagtatgatgaccacgagtacctttttgaaggcttttcctgcttctct
cacacaccacttactaatatccctttgtgtcaggttattcgcttcaacatcgattacacc
atccacttcatagaagaaatggcacctgagaactactgtgttaaaggcctggaactgttt
tcctcgtacctctttaaagacatcttggagttgtatgattggaacctcacaggtcctgaa
gaaaacggccagtcaggttgtcagaggtttcattttatgccacggttcgttcggttcctc
ccagatggaggaaaggaggtgctgtccatgcaccaggtgctgctatatctgctgcgcagc
agcacagctctagttcccgaagaggagatcgcaaacatgctacagtgggaggagctggag
tggcagaaatacgctgaggaatgcaagggcatgatcgtcaccaaccctggcatgaaaccc
agttctgtgaggattgaccagttagatcgtgagcagttcaattccagtgtcattactttc
cccatcattgtgcattttggtatccgacctgcccagcttagctatgctggagacccgcag
tatcaaaagttgtggaagagttatgtgaaattgcgtcacttgttggccaacagcccaaag
gttaaacaaattgacaaacagaagttaacgcaaagagaggaagctctgcagaagatcagg
cagaagaatacaatgagaagggaggtcacagtagagctcagcagtcagggtttctggaag
tctggtatccgctctgatgtttgccagcacgccatgatgctgccggttctgacccaccac
atccgctaccaccagtgcctgatgcatttagacaagctgatcggttacaccttcaaagaa
cgatgcctgctgcagttggctatgactcaccccagtcatcatctaaattttgggatgaat
cctgaccatgctcgcaactctctgtcaaactgtggcatacgccagcccaaatatggagac
cggaaagtgcatcatatgttcatgagaaaaaagggaattaacaccttaattaatattatg
tcaagattgggccaggatgacccatcaccctcaagaatcaatcataatgagcgcttagag
tttcttggtgatgcagttgttgagttcttgaccagtgtgcatctctactacctgttccca
cacctggaggagggaggactcgccacatatcgcacagcaattgttcagaatcagcatctt
gctatgcttgctaagaaattggagttggatcggttcatgttatatgcccacggccctgac
ctgtgcagggagtcagacctccgacatgccatggcaaactgttttgaggccctgataggc
gctgtttacatagaaggtggtttagaggaagccaagcaactctttgggagactgctgttc
agcagtgaggagctgaaggacgtttggctcaactatccacctcatcctttacaggtacag
gagacactgacagacaggcagttgatcgagtcatctccagttctgcagaaactcacaaat
tttgaggatgccatcggagtgctgttcactcacgtacgtctcctcgcacgggccttcact
ctgcgaacggtgggcttcaaccacctcaccctaggccacaaccagaggatggagttcctg
ggagattctatcatgcagctggtggcaacagaatatctgttcatccacttcccagaccat
catgaaggacatttgacactactgcgcagctccttggtgaataaccggactcaagcgaag
gttgcagaggaattgggcatgcaggaatatgcgatcactaacgacaagaccaaacgtcct
gttgccttgcggaccaagactttagccgatctgctggagtcattcattgcagctctttac
atagataaagacctggagtttgtgcacacatttatgaatgtttgctttttcccacgactc
aaggagtttatcttgaaccaggactggaatgatccaaaatcacaactgcagcaatgttgt
ctaaccctgcggacggagggcaaagagccagacattcctctatacaaaacacttcagaca
gttggaccctctcatgccaggacctacacagtggcagtgtattttaaaggtgaacggatt
ggctgtggaaaaggaccaagtattcagcaagctgagatgggtgcagccatggatgcgctg
gataaatataactttcctcagatggctcatcagaaacgcttcattgaaagaaagtaccga
caagaactgaaggagatgagaagagagcaggagcgacaggagagagatagtgatgaaggg
tag
DBGET
integrated database retrieval system
