Carassius gibelio (silver crucian carp): 128025262
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Entry
128025262 CDS
T08819
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128025262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128025262
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128025262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
128025262
NCBI-ProteinID:
XP_052467413
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Position
A12:complement(15425109..15432374)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAAFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGGGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKAHKGETVSSAALPEMEKQIAMSCLQAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVSQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPSLVLA
LERYNGKHQVLLHAAFISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLTE
LRENMDRLEKAMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYIKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYIRPKILEKGSGKLVLKAARHPCVEAQDDVAFIPNDVTFARA
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATHLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKRGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISRAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPAESMSDE
AVKEELCKLKAEVIGQNNNFVNDIVSRSAKVKLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctttccatggacagtgcatctgagcatggatttctg
aatttttatttttctatgccagagaaaccagacaccaccgtaagagtatttgatcgaaac
gattattatacggttcacggaaaagatgcagcttttgcagccaaggaggttttcaagacg
aatggagtcatcaaaaacctgggcacaggaaataagaggttggagagtgtggttctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcagacagtaccgggtggag
gtttacaagaatgccagtaagagtagcaaagaacatgactggcagatatcttacaaggcg
tctccaggaaatctgacccagtttgaggagattttatttggcggtggaggagggcctggg
gagggagctgctggtgttgttggggttcgtcttggcaccggggccgatggacagcgtgtt
gtcggtgttggctatgtggacagcaccctcaggaaactcggtgtctgtgaattccctgac
aatgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcgtggt
ggcattctgctcacagacaggaagaaatcggagttcacaaccaaagacattgtgcaggat
ctgaatcggctactgaaggcccataagggagagactgtgtccagtgctgcacttccagag
atggagaaacagattgcaatgtcttgcttacaagcagtcatcaaatacctggagcttctc
tcagatgaggccaattttggttccttcaagataaccacttttgacctcaaccagtacatg
cgtttggataatgctgctgtgcaggccctgaacctcttccagggttcctgtgatgatgct
acaggcacacactctctggcaggcctcttaaacaaatgtcgtaccccacaaggacagcgg
ttggtcagccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gatcttgtggagacttttgtggaggactctgagctaaggaagagttgtcaggaggatctt
ctccgtcgttttccagacctgaaccgaatggcaaagaagttccagcgtcaaagctctaat
ttacaagactgttacagggtctatcaagctgtgggacaactgccgagtctggtgctggcg
ttggagagatacaatgggaaacatcaggtcctcctgcacgcagcattcatctctcccctc
aacgacctcatctctgacttctccaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgagcatcatgagttcctggtgaaaccctcatttgatcccacattgactgag
ctcagggagaacatggatcgtttggagaaagccatgcaggctgccttgaacagtgcggct
cgagaactggggctggaagcagctaagactgtgaagcttgaatccaatgcacagatcggt
tactttttccgagtcacatgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaacggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacattaaaagcagagaagagtatgaagaggctcagaacgccatcgtcaaagag
atcatcagcatagctgctggatatgtggatccagtacagactctgaatgaggtgatcgct
cagctggatgcagtggtgagctttgctgtggtgtcccatgctgccccagtgccttacata
aggcctaaaatactagagaaagggtcagggaaactcgttttaaaggcagcaagacatccc
tgtgttgaagcccaagatgatgtggctttcattcccaatgatgtcaccttcgctagggcc
gaggagatgtttcatatcatcacaggtccaaatatggggggtaaatctacatacatccgt
caagtaggtgtgatcgtgctgatggcacagattggttgttttgtgccatgtgatgaggca
gagctgagtgtggtggactgtgtgctcgctcgtgtgggtgctggggacagccagatcaaa
ggagtgtccacatttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattctctcatcattattgatgaactgggcagaggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgccacccacctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcgcttgcacagcaggttcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcactctcaccatgctctacaaggtgaaaaggggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcaagagagaaggctttggagcttgaggagttccaggatatctcaagagct
ggggaagaagctggacccgaagccaagaaacgctgcctggagaaacaggagggggagaag
atcatcgaggctttcctggctaaggttaaatcaatgcctgctgaaagcatgtctgatgag
gctgtcaaagaggagctgtgcaaactcaaggcagaggtcatcggacaaaacaataacttt
gttaatgacatagtgtcacgttctgccaaagtcaaactaacttcagcctaa
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