Carassius gibelio (silver crucian carp): 128025944
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Entry
128025944 CDS
T08819
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128025944
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
128025944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
HEAT_EZ
ARM_ECM29
Arm
Motif
Other DBs
NCBI-GeneID:
128025944
NCBI-ProteinID:
XP_052468541
LinkDB
All DBs
Position
A13:5255320..5276374
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AA seq
1861 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPAPKPKDEVCAEDMSPEDISSDRLSFYRFDISRLLKHGASLLG
SAGAEFELQDDKSGETDPKERLARQRKQLQKKLGLDMGAAFGMDTEELFNDEDLEDACAS
STNRSQPGKSLGCQFSRNHLPAAELIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDVEPN
EKSNDSFEGEPEEKRRKTTNVVIEHPSTNSKVLIDNVPENSGLFEETQEWPLESFCDELC
NDLFNPSWEIRHGAGTGLREVLKCHGTGGGKTVGNTAEQMERQHQEWLEDLVIRLLCVFA
LDRFGDFVSDEVVAPVRETCAQTLGVALRHMADSGVAVTVDILLKLLTEDQWEVRHGGLL
GIKYALAVRQDLIAELLPRVLPAITEGLRDLDDDVRAVAAAALIPVVDGLVHLLPTKVPF
IVDTLWNALLELDDLTASTNSIMTLLSFLLAYPQVRQCSTQQSLTVLVPRVWPFLRHTIA
SVRRAALETLFTLLSKADQSCAVWLNPIMQDMLRHMFQSCILESNQEILELIQKVWGELL
RQAPQQYVVAASCPWMGAWLCLMMQAPHIPIDPNMLLEVKARLKEKATGKTRQGSVPVKE
TVQEYIGGAETVTEDPAMRDYVVTRARLMAAKLLGALCSCICDPRLNSSSQELRPAESLA
QLLLFHLNSKSALQRIAVSMVICEWAGLQKECELLSSVVQPRLLAILSEQLYYDEIAIPF
TRMQNECKQLIALLAEAHIDVTERINPTVFTIDQANELVTTMFSECTSSLNLKSRQFQPL
DSKRLQARSTVCETSSEWQQLQLRVHTFAACAVVGLAMLPDKLNPVVRPLMEAARREENT
LVQGYAASNIARLLQLCASRSPCPNAKIVKNLCSSVCVDPKLTPSAACPVPPASTPAIQE
SSKASVAEKEAMHHMVNKTKGIITLYRHQKAAFAITSKRGPTPKAPKTTNTDLPLGGSIT
TETDESKKQFLIQRRGAEFSLMTVARHFGKELTETLPYLWESMTGPLRNALNAQGFDSSQ
LLKQGDPVAQELVNSLQVLEVTAGAMSQELIPLLMEQLPLLCTCLQHPYTAVRHMAARCV
GVFSKIATMETMNVFLEHVLPWLGAIDDNTKQEGAIEALACVMEQLDVDIVPYMVLLVVP
VLGRMSDPGDSVRFMATQCFATLIRLLPLEAGIPDPPSMSKDLIQQKARERHFLEQLLDG
RKLENYKIPVPLKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHF
LRAQEYTRTKAPDCCPLPSIVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERAWLQ
HQVKKHNLVIASYDVVRNDIDFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRII
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVLST
TSVQEEEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHITDQLSSQHSSLRDI
HHAPKLSALKQLLLDCGLGSAGASDGGTEAVVAQHRVLIFCQLKSMLDIVEQDLLKAQLP
TVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENASLQSMG
TEQLLNLFTLDKDNKAEKSEAAGSASSGKASVKSVLDGLGDLWDQQQYENEYDLDSFMHS
L
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcaaggttggaacgtctgtttatcttactagatacaggtacgactcctgtt
acccgtaaagcggctgctcagcagttgggagatgtcgttaagcttcacccacatgagctt
aataacctgctatcaaaggttttaacatacttgaggagtccaaactgggacacacgaatt
gcagcgggacaagctgtcgaagccatagtgaagaacattccagaatggaacccagctcca
aagccaaaagacgaggtctgtgcagaagatatgtctccagaggacatctcctcagacagg
ctgagtttctacaggtttgatatctcccgtctactcaagcacggagcatcgctgctcggc
tctgctggtgctgaatttgagctgcaagatgacaagtcaggtgagacagatcccaaggag
cgattggctcggcagagaaagcagttacagaagaagttgggattggatatgggtgctgcg
ttcggcatggacacggaggagctttttaatgatgaggacctggaggacgcttgtgcttct
agtaccaacagatcacagcctggtaaaagcctgggctgtcaattctcacgcaaccatttg
ccagctgcagagctcatagattctgagtttcgtccaggcatgtccaatcgacaaaagaac
aaagccaagaggatggcaaaacttgtggcaaagcagagatccagagacgtggaacctaat
gagaagagcaatgacagttttgagggagagccagaggagaagcgccggaaaaccacaaat
gtagtcattgagcatccatcaaccaacagcaaagtcttaattgataatgtccctgaaaac
tccggtttatttgaggagactcaggaatggcccctggaaagcttctgtgatgaactgtgc
aatgacctcttcaacccctcgtgggagattcgtcacggtgccggtacgggactgagggaa
gtgctgaagtgtcacggtactggtggaggaaagactgttggcaatacagcagaacagatg
gagcgacagcaccaggagtggctggaggatttggtcatccggcttttgtgcgtctttgct
ctggacaggtttggagactttgtatcagatgaggtggttgcacctgtcagagagacgtgt
gcccagactctgggtgtagccttgaggcacatggcagacagtggcgttgccgtgactgtg
gacattctgctcaagctgctaactgaagaccagtgggaggttcgacatggaggcctgttg
ggcatcaaatatgctcttgctgtcagacaggatttgatcgcagagctgctgccccgggtt
cttcctgccattacagaaggcctgcgggatctggatgatgacgttcgtgcagtggcagca
gcagctttgatcccagtggtggatggattggttcacttactgcctactaaggttcccttc
attgtggacacactgtggaatgccctgctagaactggatgatctcacagcctcaactaac
agcatcatgaccctcttgtccttcctgcttgcttacccacaggtccgccagtgcagcaca
caacagtctctcacggtgttggttcctcgagtatggccattcctgagacacacaattgct
tctgttcgtcgggctgccctagagaccctctttacattgctttccaaagctgaccagagt
tgtgcagtgtggctgaatcccatcatgcaggacatgttaagacacatgtttcagtcctgc
atactggagagcaaccaggagattctagagctgatacagaaggtgtggggggagttgttg
cgccaggccccgcagcagtatgtggtggctgccagctgtccttggatgggcgcctggctc
tgtttgatgatgcaagcgccacacatccctatagaccccaacatgttgctggaagtgaaa
gcccgcttaaaggagaaggctactggaaagacccgacagggatcggttccagtcaaggaa
acggtccaggagtacatcggtggagcagaaacggttactgaagaccctgccatgcgagac
tatgtggtgacacgtgcacgtctcatggctgcaaagctgttgggggcgctgtgcagctgt
atatgtgacccaaggttgaatagctcttctcaggagctccggcctgcagagtctctagca
cagcttttactgttccatctcaattccaaatcagccttgcagaggattgcagtttccatg
gtgatctgtgagtgggcaggccttcagaaggagtgtgagctgctgtccagcgtggttcaa
cctcgactgctggccattctctcagagcaactctactatgacgagatcgccattcctttt
actcgcatgcaaaatgaatgtaaacaactcatagcgctgctggccgaggcccacattgac
gtgaccgaaagaatcaacccgacggtattcaccatcgatcaggctaacgagctggtgacc
accatgttctctgaatgcacctcctctctgaacctcaagtcacgtcagttccagccgctg
gacagcaagagacttcaggctcgttccactgtgtgcgagaccagctccgagtggcagcag
ctgcagctgagagttcatactttcgctgcctgcgctgtggtaggactggccatgctgcca
gataaactcaatcctgttgtcaggcccctgatggaggcggcccgccgcgaagagaacaca
ctcgtccagggttacgccgcctctaacatcgcccgcctgctgcagctgtgcgcgtccaga
tctccctgtccgaatgccaagatcgtgaagaatctctgcagctctgtgtgtgtagatcca
aagctcacccctagtgccgcgtgtcctgtcccgccagccagcactccagcaatacaagag
agcagtaaagcatctgtggcagagaaggaggcgatgcatcacatggtgaacaagacaaag
ggcatcatcactctttaccggcatcagaaagcagcttttgccatcaccagtaagagagga
cccacacccaaagcccccaaaactactaacactgacctgcccctcggaggcagcattacc
acagaaacagatgagagcaagaagcagtttcttatccagaggagaggggcagaattcagc
ttgatgacagttgccaggcattttggtaaagagttgacagaaactttgccatatctgtgg
gagtccatgaccggtccgctgaggaatgcgctgaatgctcagggatttgattccagccag
ttgttgaagcagggagaccctgttgctcaggagcttgtgaactctctgcaggtgctggag
gtcacagcaggagccatgtcccaagagctcatccctttattgatggagcagttgcctctc
ctgtgcacctgtctgcaacatccatatacagccgtacgtcacatggccgcgcgctgtgtg
ggtgtgttcagcaagatcgcaactatggagaccatgaatgtgtttctggaacatgtgctt
ccctggttgggtgcgattgatgacaacaccaagcaggagggagccatcgaagccctggcc
tgtgtgatggagcagttggatgtggatatcgtgccctatatggtgctgttggtggtccct
gtgttgggccgtatgagtgaccctggggacagcgtgcgattcatggccacacagtgcttt
gcaaccctgatccgactgcttcctcttgaggctggaatcccagacccgccgtctatgtct
aaagatctcattcaacagaaggccagagaacgtcacttccttgagcagctgcttgatgga
aggaaactagaaaattataagattcctgtgcccctcaaagcagagctcaggaaataccaa
caggatggcgtgaactggctggcatttttgaacaagtacaagcttcatgggatcttgtgt
gatgatatgggtctgggtaagaccctgcagtccatctgtattctggcaggcgatcatttc
ctcagggctcaggagtacaccagaacaaaggctcccgactgttgccctttgccctccata
gtagtgtgcccacccaccctgacggggcactgggtggatgaggttggaaagttctgctct
aaagagtatctcaatcctctgcactatactggccctcctacagaaagagcttggttacag
caccaggtgaagaaacacaatcttgtgatagcctcgtacgatgtcgttagaaatgacatt
gactttttcagggatattaaatttaattattgtatccttgacgagggtcatgtcattaag
aatggaaagaccaaactttccaaagcgatcaagcagttaactgccaactacagaataatc
ctatcaggaacacccattcagaacaatgttctggagttgtggtctctgtttgacttcctg
atgccaggctttcttggtactgagcgtcagtttgctgcccgctatgggaagcccatcctc
gccagtcgagatgctaaaagttcctcacgtgaacaggaagcaggagtgctggctatggaa
gcgctgcatagacaggttctgcccttcttattgaggagaatgaaggatgatgtgcttcaa
gatctgccacccaagatcatacaagattactactgcaacctcagtcctctacaggttcaa
ctgtacgaggactttgctaaatctcgcgcaaaggtgaacgtggatgacgttctttctaca
acatccgtgcaagaggaagaagagaaacccaaattaaaggccactggacatgtcttccag
gctctgcagtatctgaggaagctgtgtaatcacccagcgctggtgctgacccctcaacac
ccagagtacaaacacatcacagaccagctgagcagccaacactcaagcctcagagacatt
caccacgccccaaaactctcagccctcaaacagctgctgttggactgtggactgggttct
gctggagcatctgatggcgggacagaggctgtggtggcccagcaccgcgttctcatcttc
tgccagctgaagagcatgctggacatcgtggagcaggatctgctcaaagcacagctgccc
accgtcacctacctcaggctggatggaagcgttcaggccggcctcagacactccatagtt
tctaggttcaataatgacccgtccatagacgttctgctgctcactacccatgtgggaggg
ctgggtttgaatctgactggagcagataccgttgtgtttgtggagcatgactggaacccc
atgagagacttgcaagccatggatcgagctcacagaataggacagaaacgtgtggtgaat
gtgtatcgtctcatcacacggggcacactggaggagaagatcatgggtctgcagaaattt
aagatgaccattgcaaatacagtcatcagccaagagaacgccagtctacagagcatgggc
acagagcagctgctcaacctcttcacactggacaaggataataaagcagagaagagcgag
gcagcagggtcagcatcatctggtaaagctagtgtgaagtctgttctggatgggctgggt
gacctgtgggaccaacagcagtacgagaatgaatacgacctggacagcttcatgcactca
ctttaa
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