Carassius gibelio (silver crucian carp): 128026105
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Entry
128026105 CDS
T08819
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04137
Mitophagy - animal
cgib04140
Autophagy - animal
cgib04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128026105
04137 Mitophagy - animal
128026105
04148 Efferocytosis
128026105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
128026105
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128026105
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
128026105
NCBI-ProteinID:
XP_052468797
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Position
A13:complement(10332776..10349304)
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AA seq
685 aa
AA seq
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MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYELARELPLPHSVTSNLDKASVIRL
ALSYLRLRTLLKTDVLDVESELDSQWNSSYLKALDGFLMVLSADGDIVYLSESVSKCLGL
PQVDYTGHSVFEFTHPCDHEELREMLAQRTGLSKKAKEQHTNRGFLLRMKCTLTSRGRTV
NVKSASWKVLRCSGHIHTTDGVKKGVVEEKNMSSSYLVLICESIPHPMNIEAPLDSRTFL
SRHTLDMRFTYCDERITELLGFAPVELLQHSVYEYYHALDSDHMTKAHHCLFVKGQVCTG
QYRLLAKAGGFAWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTNIK
QEQEEHHEESFGTEVTVADLKEEAKDEKKEECVRDELHDSLKGKPEALTVVDSILTLDIT
STDSSISVLTEIPLYNDVMLPSSSALLPLSPLAPPYSSLNDDDVSTANLQPDDFPFPQSS
APDSSRSQVDLSVDSELSDHLKPDHVERLFSMDIQSKTTFNTQGVGLDLDMLAPYIPMDD
DFQLRTVSPAESMCSSPGSVLELTPSSSTQTAPALRAAPLDFVSCDTLPQNIRTTNQGNS
SEIIQDSDISSKCQTNPKLLKRKLETIPLSEAMRLGSVLQVVNGFPEKKIRKPDASSSEG
LRHATILLLPSGMSPWRPQMLREGY
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctgggaaaaaaagggtgagttcagagcggagaaaggagaaatcc
agagatgcagcgcgttgtcggagaggaaaagaatccgaggtgttttatgaactggccaga
gaactgcccctcccccacagtgtcacctctaacctggataaagcatctgtcataagactc
gcactcagttacctgcgcctgcgtacactactgaaaacagatgtactggacgtggagtct
gaattagactctcagtggaacagttcatatctgaaagctctggatgggtttctcatggtt
ctttctgctgatggcgacatcgtctacctgtcggagagtgtcagcaagtgtctgggcctt
cctcaggtcgactacactggacacagtgtgtttgagtttactcatccgtgtgaccatgag
gagctcagagaaatgctggcacagaggactggtctgtctaagaaagcaaaggagcagcac
acaaacagaggttttctgttgaggatgaaatgtacactgaccagcagagggcgcactgtc
aatgtcaaatctgcctcctggaaggtgctgcgctgttcgggccatatccacacaacagat
ggcgtcaagaaaggtgtggttgaggaaaaaaatatgagttcttcgtacctggtgctcatc
tgtgagtctattccccacccgatgaacattgaggctcctctggactctagaacatttctc
agccgccacactttagatatgcgcttcacctattgcgatgagaggatcacagagctgttg
ggttttgctccagtggaactgttgcagcattctgtgtatgaatactatcacgcactggat
tctgaccacatgaccaaagcacaccactgcttgtttgtgaagggacaagtgtgtactgga
cagtaccggctgctggctaaagcaggagggtttgcttgggcagagactcaagccactgta
atctataacagtaaaaactcccagccacagtgtgtggtctgtgttaactatatcctcagt
ggcattgaacagcccaaacaaatcctgtcccttcaacaaaccaacagcacaaacataaaa
caggaacaggaagaacaccacgaggagtcattcgggactgaagtgactgtggcagacttg
aaagaggaggcaaaggatgagaagaaagaagagtgtgtgagagatgagctacacgacagc
ctgaaggggaagccagaggcactgactgtagtagactcaatcctcacactggatatcacc
agcacagactcctcaatctctgtgttgacagaaattcctctctacaatgatgttatgttg
ccctcttcaagtgccctgctacccctctcacccctcgctcctccctactcctccctaaat
gatgatgatgtctccacagccaatctacaacctgacgacttcccctttccacaatcttcg
gctcctgattcttccagatcccaggttgatctctctgtggattcagaattaagtgaccat
ctaaaaccggatcatgtggaaagactattttccatggatatacagtccaagacaacattt
aatacacagggtgtgggtttggatctggatatgttggctccatacattcccatggatgat
gatttccagctgcggactgtttctccagctgaatcgatgtgttccagcccaggttcagtg
cttgaactgaccccctccagcagcacacaaactgcccctgctctccgagcagcccctcta
gactttgtgtcctgtgacacccttccacagaacattagaaccacaaaccagggcaacagc
agtgaaattattcaagacagtgatatttcttctaaatgtcagacaaacccaaagctactc
aagaggaaattggagaccatacctctgtctgaagcaatgaggctgggttctgtgctgcag
gtggtgaatggttttccagagaaaaagatcagaaaaccagacgcttcatcatcagaaggg
cttcgtcacgccacgatactgttgctgccatctggtatgtcaccatggagaccacaaatg
ttgcgagaaggttattga
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