Carassius gibelio (silver crucian carp): 128026109
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Entry
128026109 CDS
T08819
Name
(RefSeq) CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
cgib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128026109
09124 Replication and repair
03420 Nucleotide excision repair
128026109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128026109
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128026109
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128026109
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128026109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
TRAF3_RING
zf-UDP
zf-C3HC4
zf-RING_2
zf-P11
TRAF6_Z2
YscJ_FliF_C
Motif
Other DBs
NCBI-GeneID:
128026109
NCBI-ProteinID:
XP_052468807
LinkDB
All DBs
Position
A13:complement(10391082..10410079)
Genome browser
AA seq
309 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVEMLFVRGSGNCVQCNTPLRKSNFRV
QLFEDPAIDKEVEIRKKVLKIYNKRELDFYTLKEYNDYLEQVEDIVFNLTNNLDVERTKQ
MMEQYQRDNKDIIQKNKAKLTREQEELEELLLQEQQGSEQRRLETLQEEQRQLQAKRKNK
QALLDELEISKLPAAVLLAQHKDRASQLETQIEKQKQNVKPANIFSTGIMMGQTVSLVSV
SRVEEVLYVYQPLCFDTYGPPIPELDQLGRLGYLNHVRTASPQDQAGGYTSGLACHRAVQ
DAFSGLFPS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcagggatgcccgaggtgcaagacgaccaaatacagaaatccatctctgaag
ctgatggtgaatgtgtgtggacacacgctgtgtgagagctgtgtggagatgctgtttgtc
cgtggttcaggtaactgtgtgcagtgcaacactcctctgagaaagagtaatttccgcgtg
cagctcttcgaagatccagccatcgataaagaggtggagatccgcaagaaagttcttaaa
atctacaataagagggaattagatttttacactctgaaagagtataatgactacctggag
caagtggaggacattgtgtttaacctgacaaataacttagatgttgaaaggaccaagcag
atgatggaacagtaccagcgagataacaaagacattatacagaaaaacaaagccaaactg
acacgtgagcaggaggagttggaggagctgttgttgcaggagcagcagggttcagagcag
aggagactggagaccctgcaggaggaacaaagacaactacaggctaagaggaaaaacaaa
caggccctgctagatgaactggaaatttccaagttacctgcagctgtgctgttggcccaa
cataaagatcgagcctctcaactggagacccagatagaaaaacagaagcaaaatgtcaag
ccagctaacatcttctctactggaataatgatgggtcagactgtgtctttggtgtctgtg
tctcgtgtggaggaggtgttgtatgtctatcagcctctttgctttgacacatatgggcca
cccattccagaactggatcagttgggccgattagggtatttgaatcatgtgcgcacagca
tctccgcaggatcaggctggtggttatacatcaggactggcatgccatcgcgccgtccag
gatgctttcagtggcctcttcccctcatga
DBGET
integrated database retrieval system
