Carassius gibelio (silver crucian carp): 128026214
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Entry
128026214 CDS
T08819
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128026214
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Anti-adapt_IraP
Motif
Other DBs
NCBI-GeneID:
128026214
NCBI-ProteinID:
XP_052469030
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Position
A13:complement(13681941..13701424)
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AA seq
1523 aa
AA seq
DB search
MDDLRQQRNYSGGSSGERGITETTISTTRIISLPPRGFSASTNKGMSSTSRSPGLEKNIL
TPSNSSSFFSSSSVGVSAGGLGSGSGEYLAEETTVSRKTGGSSGSGTGSRVRSSSTDGMR
RTQDSPLFVERKSKTTHSRRYDESSSDNSSPEIKRKDYGSRGRSQSRETEIRTRLQSASP
STRWTELDDVKKLLKGSRSASVSPTRSSSSSPLPVPRKARTLDTKISTKQVEQYDTTLLE
AELASYTWNSSTLPSTVSTGPAYTFHSSTNNTSMGATLVNSTSPSSLSVYGFHNNLAPAS
GVLTTSGVNTQSGYGVQKNYVTSPSSTLGVGTGVSAAGYGVQKNYSSSPNSTLAVSTGVS
TSGTGTRTLNENVSKRYLTLEKENIPAKRETEELILTKDSGKQFTNSTPNGTGGSYSDVS
VKKETITTSYSERAPVKSSSGAYYGSTSVSTKDKATYAEIHKAKVVDDDDSKYGGGLCGC
GPNCCSWWKWLLGFLLSLLLLLGLLFGLIALSEEVKNLKSRVSALEEISSSMKSHTSRLS
SPIDDTSIYKDAGSKAAYVNSLDSAVYSDSSVLQRNVQQILRAELQSEAMKVFLASSVKT
ERGLPGPKGDTGSPGTKGDNGFPGLPGPPGMPGHPGREGQKGDKGSAGEHGPEGPPGFRG
RDGQPGPRGEPGPSGAGEKGERGIPGSPGSPGLVGPPGPKGASGLHGEQGPQGFRGEPGP
AGPKGERGLSGPPGSKGDHGDRGENGLPGVPGAAGRQGPSGEKGAKGSAGPQGPDGEKGQ
RGEPGSIGLPGIRGPPGPPGDPGQPGTPGIQGPPGLPGNPGQPGTKGETGEAGRVINAAG
SSSVAIPGPPGSPGPPGPPGSPGLSGPVGPAGLPGQPGPKGDKGDQGEPGVVVNTGETLV
ATRAERQYGATHVGVTGPPGPPGPPGPPGRPGDSRPGPPGPPGEPGAQGYGRPGPKGDKG
EPGNFVPNSGTFFAGPPGPPGPQGPKGVTGAQGPRGYQGEPGQPGLPGSPGRVISEYGVG
QGQPGPPGPPGPPGRDGLKGDPGVPGTSAFQGESRVSGAVAVGPQGRTGPPGPPGPPGQP
GHSGGSHSAADYRRYIMEYMQSDSMRQHLSGIQGPPGPPGPSVSVEDVASRVIAYIRRSG
ISGNSISQGPQGPPGPPGPPGSISADYIISLLQREDVRRYVIGPPGPPGSPGISASTFNA
QEVANYAIRMMNEQGMTGRSGPPGPPGPPGQPGASYSDITALLQRSGLSGSVGRPGPPGP
QGIQGPPGPPGIPGGSSAVTGYRLEEIQLYLQKSGFRGPPGLPGPPGPQGPPGDTSGLVS
YSGSSAREQIRAELHDYLNSDTMRRYVHGPPGPPGLPGQKGERGEPGHSYHNARSQHRYG
SEISEPVDYSNVALKVTDYIKNQGILQDLTEGYWRTQAGRIQGPAGPPGPPGPPGYSRVI
AAYGNVTADLMDFFRTYGTIPGPPGRQGPKGDRGYPGPKGEKGETGSSGIPGLPGQRGPE
GATGEKGEKGDFQTGRWIRTNGV
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaagacagcaaagaaactattcaggaggaagttcaggagagagaggcatc
acagaaacaacaatttctactactagaattatatctttacctccacgaggcttcagtgca
tcgaccaacaagggcatgtcaagcacctctaggtctcctggcctggagaagaacattttg
actccgagcaacagcagttcttttttctcatcctcatctgtgggtgtgagtgcaggtggg
ttaggatctggatcaggggaatatctggcagaggagacaactgtgagcaggaagacaggt
ggttcctctggatcgggaacagggtcgagggtgagatccagctccactgatggcatgaga
agaacacaagactcccctttgtttgtggagaggaaaagcaaaactactcattcacgtcgt
tatgatgaaagttcaagcgacaattcatccccagaaataaaaagaaaagactatggttca
agaggaaggagtcaaagcagggagacggaaatcaggaccaggctacagagcgcatcaccc
tccactagatggacagagctggatgatgtgaagaagctgctgaagggatcacgttcagcc
agcgtcagccccacacgatcttcctcctcctcccctctccctgtacctcgcaaggccaga
accttagacaccaagatctccaccaagcaagtcgagcaatatgacaccactcttcttgag
gctgagctggcctcatacacatggaacagctccaccctgccctctacagtctccactggt
cctgcgtacaccttccacagcagcaccaacaatacatcaatgggagctactcttgttaac
agcacatcaccatcctccttatcagtgtatggcttccacaacaatttagctcctgctagt
ggagttctaaccaccagtggagttaacacacaatcaggatatggtgtccagaagaattat
gtgacaagtcccagcagcacacttggtgttggcacaggcgtctccgctgcaggatatgga
gtgcagaagaactattcctcaagtcccaacagcacacttgctgttagcacaggcgtctct
acttcaggaactggtacaaggacccttaatgagaatgtgtcaaagagatacctgacactg
gagaaagagaacattccagcgaagagagaaaccgaagaacttatcctgaccaaagacagt
ggaaagcagtttaccaacagcacccccaatgggacaggagggtcatattcagatgtttca
gtgaagaaggaaactataacgaccagctattctgaaagggctcctgtgaagtctagctct
ggtgcatattatgggtctacatcagtgtcaacaaaagataaggctacatatgcagagatt
cacaaggctaaggttgttgatgacgatgactctaagtacggagggggtctttgtggatgt
gggccaaactgctgttcctggtggaagtggctgctggggtttttgctcagtcttctgctg
ctcctcggccttctgtttggactcattgctttatctgaggaggtaaagaatctaaagtct
cgtgtcagcgctcttgaagaaatatcctcctccatgaaatcccacacgagtcgtctgtcc
tctcctattgatgacactagcatatataaagatgctggaagtaaagcggcatatgttaat
tcactggattctgcagtttattcagacagttctgtactgcagagaaatgtacagcaaata
ctgagagcagagctgcagtctgaagccatgaaagtcttccttgcttcttcagttaaaact
gaaagaggacttccagggcctaaaggtgacaccggatctccaggaacgaagggtgataac
ggttttccaggcctaccaggtccaccaggaatgccaggacatccaggaagagaagggcaa
aaaggagacaaaggaagtgcaggtgaacatggtccagaaggaccaccgggtttcagggga
agagatggtcagcctggaccccgtggtgagccagggccctcaggagccggagagaagggt
gaaaggggtattcctggttctcctggctctcctggtcttgttggtccacctgggcctaaa
ggtgctagtggtttacatggtgaacaaggccctcaaggttttagaggtgaaccaggtcct
gccgggcctaaaggtgaaagaggtctctccggtccacctggaagtaaaggtgatcatggt
gatagaggagaaaatggattgccaggtgttcctggtgctgcaggacgacaagggccatct
ggtgagaaaggagctaaaggatcagcagggcctcaaggacctgatggtgaaaagggccaa
cgaggtgagccaggctcaattggcttaccaggaatcagaggaccaccagggccacctggc
gatcctgggcaaccaggaactccagggattcaaggacctccaggcctacctggcaatcct
ggtcagcctggaactaaaggtgagactggtgaggctggaagagttatcaatgcagcaggt
tctagctcagtggcaataccaggaccacctgggagccctggtcctcctggcccacctgga
tctccaggactctcaggtcccgttggccctgctggacttcctggtcagcctggtcctaaa
ggtgataagggagatcaaggagaaccaggtgttgttgttaacactggtgagactttggtt
gcaacgcgagcagaaagacagtatggtgctacacatgttggtgttactggaccacctgga
cctcctggtcccccagggcctcctggacgtccaggtgattctaggccaggtccaccagga
ccacctggtgaaccgggtgcacaaggatatggcagacctggtcctaaaggagacaaggga
gaaccaggaaactttgtgcctaattcaggaacattttttgccggaccacctgggccacca
ggaccccaagggcctaagggagtgacaggtgcccaaggtccaagaggataccaaggggaa
ccaggtcaacctggccttccaggaagtcccggtagagttatctctgagtacggtgtgggt
caaggtcagccaggtccaccaggacctcctggaccacctggacgagatggtcttaaaggg
gatcctggagtaccaggtacatcagcattccaaggagaatcaagagtatcaggagcagtt
gcagtcgggccacaagggcggactggtcctccaggacctcctggtccacccggtcaacca
ggtcattctgggggatcccattctgctgcagactatcgtcgttacatcatggagtatatg
cagagtgacagcatgaggcagcatttgtctggtattcagggaccacctggtccacctggt
ccatcagtgtctgtagaggacgtggcatctcgggttatcgcttacattcggcgctctgga
attagtggtaacagtattagccaaggtcctcaaggacctccaggacctcctggcccacct
ggaagtataagtgctgactacatcatttcccttttacagagagaagatgtgaggcgttat
gtgattggccctccaggacctccgggttcacctgggattagtgctagtacctttaatgca
caggaagtggcaaactatgccatcagaatgatgaatgagcagggaatgacaggcagaagt
ggaccaccaggcccccccggcccacccggccagccaggtgcttcctacagtgacataacc
gctctgcttcagaggtcagggcttagtggaagcgttggacgtcctgggccccctggtcct
caaggaatacagggaccccctggtccacctggcatcccaggaggctcctctgcagtcaca
ggttacagacttgaggaaatccagctctacctacagaaatctggttttaggggacctcca
ggcctacctggtccacccggtccccagggtcctccaggagacactagtggccttgtatca
tattcaggatcttctgcacgagaacagatccgcgctgagctccatgactacctaaacagt
gacactatgaggcgctacgttcatggtccccctgggccccctggactgcctggtcagaag
ggtgaacgtggtgaacctggacacagttatcacaatgctagaagccaacaccgctatggc
tctgagatcagtgaaccggtagactactccaatgtcgcactcaaagtgactgattacatt
aagaatcaaggtatactgcaggacctgacagagggatactggagaacacaagcaggaagg
atccaaggacccgctggtcctcccggtcctcccgggccacccgggtacagccgtgtgatt
gccgcctacggaaatgtgacggctgacttaatggacttctttagaacatatgggaccatc
ccagggcctcctggcaggcaaggacccaaaggagaccgaggataccctggacctaaagga
gaaaaaggggaaacggggagctcggggatacctggccttccgggacaaagaggaccagag
ggagcaacgggagaaaagggtgaaaaaggtgatttccagactggtagatggattcggacc
aatggggtgtaa
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integrated database retrieval system
