Carassius gibelio (silver crucian carp): 128026450
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Entry
128026450 CDS
T08819
Name
(RefSeq) putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
cgib03012
]
128026450
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128026450
Translation factors [BR:
cgib03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128026450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
RWD
HA2_C
zf-CCCH_4
HA2_N
AAA_19
zf-CCCH
AAA_22
nSTAND3
NPHP3_N
ResIII
AAA_14
UBA
ATPase_2
NB-ARC
GIT_CC
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128026450
NCBI-ProteinID:
XP_052469586
LinkDB
All DBs
Position
A13:complement(20274540..20288332)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSGRRRGKPNRGGGRFNKPRGRGGGRGGGGGNRKAASGGWDDEDDFSLDLGPSQSFKPPS
SRGPRGVRGARGGSGRGRSQALPRKHDEEDKRSRFRPEQVQLPLQKIHMTSANRLQVKEL
LRELQSHDHPTPNSGSDYEGGEEEEDEEEEFDELDRREEGQFWQTHDDGVECAESDDWME
EPVEEKHSKPEPVISLFALGTLCRYGFDRERCRQALEAGEESGRGEVGATLELLLSQMFT
ERFGTSALKPQTSQLPSPEECVALRQEEALALTAIYGDRFCERISSRVWTIQLDLLWVDE
SRNKTSNSSNCKKQSGSNQVCKFYLKGAGCKYGNRCKFQHQTHEPSSPRDFCKGSQPGFS
STEAPVYQLEIRFQPGSLYPFQAPLVAFSSTNESLSGAGRLSVTEHLFDQSLSAAREGEP
VVYTLISCLEEDGPARELLSAAHHKYSAPPPVLTPPTAAPTRSQSSRNTLANSITTDKTP
RDRSNNTTESTNHRVGRKEDASYRRQDIGDEQEDSDDEGDEDEEECIPVENESYVNLRKR
MVKKSEVKTEQILQENKKLCGEFKKKQSSRRYISMQEQRQKLPAFLKREAILDCLDKNQV
LVISGMTGCGKTTQIPQFILDRFLRTGRQDKVPNIICTQPRRISAIAVATRVAQERAEAL
GHSTGYQIRLETVRSSSTRLMFCTTGVLLRRLEGDSELRDITHVIVDEVHERTEESDFLL
LVLKDLIAKRSDLKIIMMSATLNAELFSQYFNDCPTIHIPGRTFPVEQFFLEDAIAKTRY
VIEDGSPYRRSTKQTRPSAQGGMTGKGRAPVEDFDDDRGWSCTSFMKKDSVKDNIPDQQL
SQQELTVRYSNCSKSVVKTLAAMDLDKINMDLVESLLEWIVDGDHSFPAGAVLVFLPGLA
EIKQLYEQLQSNRMFNNRRKNRCVVYPLHSTLSNEEQQAVFNRPPEGVTKIIISTNIAET
SVTIDDVVYVIDSGRMKEKRYDASRSMESLEDVWVSRANALQRKGRAGRVASGVCFHLFT
SHRFRHHLSQQQLPEIQRVPLEQLCLRVKVLEVFAERPLESVFSQLIEPPEVGSLDAAKQ
RLCALGALTDKESLTPLGWHLACLPVDVRIGKLMLLGAIFRCLDPALTIAASLAFKSPFV
SPWDKREEANEKKLAFSLANSDHLALLQAYKGWCNAAQSGANAGYRYCRENFLSNRGLQE
IAGLKRQFAELLSDIGFVKDGLKARVIEKMSSKGSDGVLEATGYEANLNSDNTKLMSAML
CAALYPNVVQVRSPQGKYKLTSKGAMKMQPKAEELRFMTKSDGAVHIHPSSVNYSVRHYD
SPYLVYHEKVKTSRVFLRDCSMVCVYPMVLFGGGQVSVELQRGEFIVSLDDGWIKFAAAS
HEVAELVKELRWEMDQLLEEKIRNPSIDLISCPRGSRIIDTIVSLISTQ
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaaggaggagaggcaaacccaatcggggtggaggacggttcaataaacccaga
ggaagaggaggaggaagaggaggaggtggaggaaacaggaaagctgctagtggaggttgg
gatgatgaagatgatttcagcctggacttgggtcccagtcagtccttcaagcctccctca
tcaagaggtccaagaggtgtccgaggggctcgtggaggatccggcagaggaagatctcag
gcactgcccagaaaacatgacgaggaggacaagagatccagatttagacccgagcaggtg
cagctgcccctgcagaagatacacatgacgtccgcgaacagactacaggtcaaagagctg
ctgcgggagcttcagagccacgaccatccgacaccaaacagcggctctgattatgagggt
ggtgaggaggaagaggacgaggaagaggagtttgatgagctggaccgtcgtgaggaaggt
cagttctggcaaacccatgatgacggagtagaatgtgccgagagtgacgactggatggag
gagccggtcgaggagaagcactcgaagccggagccggtgatctccctgtttgctctgggc
actctttgcagatacgggtttgatcgggagcgctgtcgacaagctttggaggccggagaa
gaaagtggacgaggtgaggttggagcgacattagagctcctcctatcccagatgttcaca
gaacgttttggcaccagcgccctcaaaccccaaacatcccagctcccttctccggaggaa
tgtgtagctctgcgacaggaagaggccctcgctttgaccgcaatctacggggatcgcttc
tgtgagcgcatcagcagtcgtgtttggacgattcagctcgacctgctgtgggtggatgag
agtcgcaacaaaacttcaaactcgtccaattgtaaaaagcagtcaggatccaatcaggtt
tgtaagttttacctgaagggggcaggttgtaagtatggaaaccgctgcaagttccagcac
caaactcatgaaccgagctctcccagagatttttgcaagggaagtcagccagggtttagc
agcacagaagctcccgtttaccagctggagattcgtttccaaccaggtagtttatatcct
tttcaagctccgctcgtggccttcagtagcaccaatgaatcgctctctggcgcgggacgc
ctcagtgtcacagagcacctgttcgatcagtcactaagtgctgcgcgggaaggagagccg
gtggtctacaccctcatttcctgtctggaggaggacggacctgccagagagctgctgtct
gctgctcatcacaagtacagtgctccgccccctgtcctgactccacccaccgccgctccg
accaggagtcagagcagtaggaacacactagccaacagcattacgactgataaaacacct
agagatcgatcaaacaacaccaccgagagcacaaaccacagagtgggacgaaaggaagat
gcgtcgtaccgaagacaggatattggtgatgaacaagaagatagtgatgatgaaggtgat
gaagatgaggaggaatgtatacccgtggaaaacgagagctatgtgaacttaaggaagagg
atggtgaagaagagcgaggtcaaaactgagcagatactgcaagagaacaagaagctctgc
ggagagttcaagaagaagcagtcgtcgaggcgctacatatcgatgcaggagcagaggcag
aagctacctgcattcctgaagagagaggccatattggattgtttggataagaaccaggtt
ctcgtcatcagtgggatgactggatgcgggaaaaccactcagatccctcagtttatcctg
gatcgtttcctccggactggacggcaggataaagtgcccaatattatttgcactcagcca
cggcgaatctctgccatcgctgtggctacccgagtggcccaggaacgagccgaggccctg
ggtcactccacaggctaccagatccgtctggagaccgtcaggtcctccagcaccaggctg
atgttctgcaccaccggcgtccttttgcgcaggttagagggcgactccgagctccgagac
atcacacatgtgatcgtggatgaggtccatgaacgcacagaagagagtgacttcttgctg
ctggttctgaaggatctgatcgcgaaaagatcggatctgaaaataattatgatgagtgca
accctgaatgccgagctcttctcccagtacttcaatgactgccccaccatccatatacca
ggacgcacattcccggtggagcagttcttcctcgaagatgctatcgctaagaccaggtat
gtaattgaagatggtagtccataccggcgctccacaaagcaaactcgtccctccgctcag
ggtggcatgactgggaagggacgggctcctgttgaagactttgatgatgatcgtggctgg
tcctgtacgtccttcatgaaaaaggattcggtcaaagacaacatccctgatcagcagctc
agtcaacaggagctcaccgtccgatattccaattgctcaaagtctgtagtgaaaacattg
gctgctatggatcttgataaaatcaacatggacctggtggagagtctgttggagtggatt
gttgatggagaccacagcttcccagcaggtgctgttttggtcttcctaccaggacttgct
gaaataaagcaattatatgagcagctccagtcgaacaggatgttcaataacagaagaaaa
aacaggtgtgtagtgtatcctctacactcaaccctgtccaatgaggagcagcaggcggtc
tttaaccgcccccctgagggtgtgaccaaaatcatcatctccaccaacatcgctgaaacc
tctgtcaccattgacgatgtggtgtatgtcatagactctggccggatgaaagagaagagg
tacgatgccagtcgcagtatggagagtctagaggacgtgtgggtgtctcgtgccaacgct
cttcagagaaaaggccgcgccggtcgtgtggcgtcaggtgtctgcttccatctgtttacg
agccatcgcttcagacaccacctgagccaacagcagctgcctgagatccagagagttcct
ctggagcagctctgtctaagggttaaggtgttggaggtgtttgcagagcgtcctctggag
tcagttttctctcagcttattgagccgcccgaggtgggcagtctggatgccgctaaacag
cgcctgtgtgccctgggcgccctgacagacaaggagtctctgacgcccctcggctggcat
ttggcctgtctgccggtggacgtgcgcatcggtaaactcatgctgctgggggccatcttc
cgctgcctggaccctgccctcaccatcgccgccagcctggccttcaagagtccattcgtg
tctccctgggacaaacgagaggaagcgaatgagaagaagctggccttctctctggcgaac
agtgaccatctagctttgctgcaggcgtacaagggctggtgtaatgcagcacagagcgga
gctaatgcaggttaccggtactgcagagagaacttcctctcgaaccggggcttacaggag
atagcaggtcttaaaaggcagtttgcagagcttctgtctgacattggctttgtgaaggac
ggactgaaggccagggtcattgaaaaaatgagctcgaaaggaagtgatggggtgctggag
gccacaggttatgaggccaacctgaactctgataacaccaagctgatgtcagccatgctg
tgtgcagctctctaccctaatgtagtccaggtgagatctcctcaggggaagtacaagctc
actagtaaaggagctatgaagatgcagcctaaagcagaggagctgcgcttcatgaccaag
agtgatggagccgtccacatacacccctcatctgtcaactactctgtgcggcactatgac
agcccatacctggtgtaccatgagaaggtgaagacgagtcgagtgtttctccgtgactgt
agcatggtgtgcgtgtatcccatggtgctgttcggtggcgggcaggtgagcgtggagctg
cagcgtggagagttcatcgtctctctggacgacggctggatcaaatttgctgctgcgtct
catgaggtggctgagctggtgaaagagctgcggtgggagatggatcagctcttagaggag
aagatccgaaatcccagcatcgatctgatcagctgtcctcgaggatctcgcatcatagac
accatagtgtcactcatctccacacagtga
DBGET
integrated database retrieval system
