Carassius gibelio (silver crucian carp): 128026944
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Entry
128026944 CDS
T08819
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128026944
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
128026944
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgib04515
]
128026944
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128026944
Cell adhesion molecules [BR:
cgib04515
]
Cadherins
Protocadherins
128026944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
128026944
NCBI-ProteinID:
XP_052470194
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All DBs
Position
A14:4960466..5111829
Genome browser
AA seq
1228 aa
AA seq
DB search
MDLASEAHVLVVLLTCLFLMCQAQEKDYTIKEEQPENVRIGNLRKDLNLNLDPDIKLSSA
LQFKPVYKTGDVPLVKVEASTGEIFTTANRIDREKLCSRVFNDKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDREMKDTFVMKIKVEDGGTPPKSSTAILQVTVS
DVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPSTKQHF
AIDSTTGLITIKQPLDREFNPVHKLIVLASDGSSTPSRATVIVNVTDTNDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVMDRDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIRIVASDSGKPSLNTSAMVLIKIKDENDNVPVFPQPEIQLSIPENND
PGTQLIKISATDADSGSNALIIYSLGPDAPDGFNINPRSGILSVVKRLDREKQETYSFTV
IARDNGSTPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGQMQTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKMTGNITLQEKIIASDQGLHRLVVKVKDLGQPESLHAIALVHLFVNDTVSNST
FIQEQLRKSLETPLERNIGDNNVTPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVTIDEAKTDDPTHEHING
TLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHV
IQELPLDNTFVVGCDTLSKCSSSSSDPYSVSECSCQGGFKAPGQIHTRQNQSQTPDKTFP
VVPAMCPHKQTQRRVTFHLPDGSQESCSDSGLGEQEPNSGASITQPLPLGFPQEEYYEQT
SPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSCWMPPALTQFQTSGA
ATLPSFGFQQSWARGTKADGRHTLGRSVPKDDLDKGSNRPQFYNTLERHCSKKEDPIKVI
PLASFSATSSSQTSTSGGPSAFLHEHQL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggacttggcaagtgaggcccatgttctggtggttttactcacctgcctgttcttgatg
tgccaggctcaagagaaggactacaccataaaagaggaacagccggagaatgtgcgcatc
ggaaacctgcgcaaagacctcaacttgaaccttgatccagacattaaactgtcttctgcg
ctgcagtttaaacctgtctacaagacgggcgatgtgccattggtcaaggtagaggcaagc
acgggagagattttcaccacagccaaccgcatcgaccgtgagaaactctgttccagagtc
ttcaatgataagcgctgcttttacgagatcgaggtcgccgtgctaccagacgagattttc
cgattggtcaagatccgttttctcatcgaagatatcaacgacaatgccccgctctttcaa
tcgactgttatcaacatctccattccagaaaacacagccatcaacagccgctaccctgtc
ccttccgcattcgaccctgatatcgggatcaatgggattcaacactacgagcttgtcaag
agtgtgagtgaatttggcctggacatcattgagacgcctgaaggagacaaatggccccaa
ctcatagtccaacagagcctcgatcgggagatgaaggacacctttgtgatgaaaattaaa
gtagaggatggtggcacccctccaaagtccagcacagctattctgcaggtcaccgtctca
gatgtgaatgacaatcggccagtgttcaaggacagcgaggtggaggtaaacgttcctgag
aatgccccaatgggaacatctgtcactcaccttcatgccacagatgctgatctgggatcc
aatgctcagattcacttctccttcagcaaccaaatatccccttccaccaaacaacatttt
gctattgacagcacaactggactgattaccatcaagcagccattggacagggaattcaac
ccggtgcacaagcttatagtgctggccagtgacggtagctctaccccttcaagggctaca
gtgattgtcaatgtaacagacactaatgacaacgtcccctctatagatacccgttatata
atgaatcttgtaaatggcactgtgctgttgtctgaaaatgccccccttaacacaaaaata
gctctaattaccgtgatggacagagattcagatctaaatggtaaagtgacttgttacact
gatcacgatgtaccttttagactgaagccagtcttcaatgaccagtttttgcttgaaact
gctgctcctttagattatgagaccactcgagagtatgcaattaggatagttgcatctgac
tctgggaaaccttctttgaacacttcggcaatggttctgattaaaataaaggatgagaat
gacaatgtcccagttttccctcagcctgaaatccagctgtccattccggaaaacaatgac
ccgggcacacagttgataaaaatcagtgcaacagatgcagatagtggttctaatgccctt
attatttacagtcttggcccagatgctcctgatggatttaacataaatccccgatctgga
atcctttctgtcgtcaaaaggctggatagggagaagcaggagacgtattcattcacagtc
attgccagggataatggttctacccctctccaaagcaatgtcacagtgaagctaatagtc
caagaccaaaacgacaacagtccagcctttacccatcccgagtacaatttctatgtgcct
gagaacctgcctttgtatgggacagtgggtttgatcactgtcactgatgcagatgctggc
gacaatgcagtcgtcactctctcgatcataaatgggaaggacaatttcatcatcgacccc
aaaaccggggtgatcaaaccaaacattacctttgacagggagcaacaaagttcctacacg
tttgttgtcaaggctgtggacgcaggtcagatgcaaacaacctcctatgccaaggtcacc
ataaatgttgttgatgtgaatgacaatcgaccagtgtttgtcattccctcctcaaactac
tcctatgatctagtaccttcaaccaccagccctggatcagtggtgaccagagtatttgcc
attgacaatgacactgggatgaatgctgagttgcagtacagtattattggagggtcaccg
agaggattgtttgccattgacaaaatgacaggcaacattactctgcaggagaagattata
gcttcagatcaaggtctccacaggctggtggtaaaggtaaaagacttgggacagcctgag
tccttacatgcaatcgcccttgtccatttgtttgtcaatgatactgtctccaattcaaca
ttcatccaggagcaacttcgcaagagtttggagactcctttggagcggaacattggggac
aacaacgtgacacctcagaccaatggctacgtaattgttgttattgccataatagctgga
actatgaccgttatcttggtgatctttgtgactgctttggtacgctgtcgacagacacct
agacacaaagttgtccagaagagtaaacagagtggcgagtgggtatcacccaaccaggag
ggtcggcagattaaaaagaaaaagaagaagaagaagaggtcaccaaaaagtttgctgctg
aatttcgtaaccattgatgaagccaagaccgatgaccctactcacgagcacatcaatggc
accttagacctccctgttgaacttgaggagcagacaatgggaaagtataactgggctacc
acaccaactaccttcaaacccgacagtcctgacttagccaagcactacaaatctgcttcc
cctcagccaacatttcagatcaaaccagagacccctgtggctcccaaaaagcatcatgtc
attcaggaactcccgctggacaacacattcgtggtgggctgtgacacactctccaagtgt
tcctcgagcagctccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaaa
gcacctggacaaatccacaccagacagaaccagagccagactccggataaaacattccct
gttgtcccagccatgtgcccccacaagcagacgcaacggcgcgtgacctttcacctcccg
gacggctctcaggagagctgcagtgacagcgggctcggagagcaggagcccaatagcggt
gccagcatcacccagcctctgcccttaggcttccctcaggaagagtactatgaacagacc
tcaccgaacagccgcactgagggtgacggcaactctgaccctgagtccactattgaagtg
aacctgcagaaagctctcgccgaggcctcggagacctgtacccaggaatgtctgatcctg
ggtcattctgacagctgctggatgccgccagcgctgacccaattccagacgtccggcgcc
gccactctgccctcctttggttttcaacaaagctgggcacgggggaccaaggcagatggg
cgtcacacccttggcaggtcagtgcccaaagatgatctggacaaagggagcaaccggccc
caattctacaacacacttgagagacactgcagcaaaaaagaggatcccatcaaggtcatc
cctctagcaagcttttccgccacgtccagctctcagacgtccacgagcggaggtccttca
gccttcctgcacgagcatcagctgtag
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