Carassius gibelio (silver crucian carp): 128027213
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Entry
128027213 CDS
T08819
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128027213
03015 mRNA surveillance pathway
128027213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128027213
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128027213
mRNA cycle factors
P-body specific factors
128027213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
128027213
NCBI-ProteinID:
XP_052470532
LinkDB
All DBs
Position
A14:2009748..2014610
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AA seq
461 aa
AA seq
DB search
MKEDKENTRPREKKVEIKCDENEKPNKEKKEALTKIVIRRLPPSLTKEDLVEQLQPLPEL
DYLEFFSSDTSLFPHLFSRAYLNFKNQDDVVLFRDRFDGYVFIDSRGQEYPAIVEFAPFQ
KTAKKRSKKKDAKSGTIEDDADYKKFLESYNGDEEKFPSNPETLLEEIEAKTKELSAKKT
TPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKGEKAS
DKDKDQPKDEQPKIKLLKKTEKADDVDTEKPKDKAKKQDREKQKEDRPPGGGETKKRQNG
EHREEKGGKSEDSGHKNYRDRDGDRERERDRERERRQKDKERIRRQDEERRKRERQDREN
TYRKRDEEGKKDKERVWEKRKNENTGESSVSAHPEKPSRDSRKEDSAKRDRLRNKDRPTI
QLYQPGARSRNRGGGGTGGDGQGEEKRAERETKNTQEKAAE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggaaaacacgcgtcccagagaaaagaaagtggaaataaaatgtgat
gaaaatgaaaagccaaataaagagaagaaggaggctttgacaaagattgtgatccggcgt
ctccctccaagtcttactaaagaagatttagtggaacaactgcagcctcttccagagctg
gattacctggagtttttctctagtgatactagtcttttccctcatctgttttcaagagcg
tatctgaatttcaaaaatcaagatgacgtagttctcttcagggaccggttcgatggctat
gtcttcattgatagtcgaggtcaagaatatccagcaattgttgagtttgcgccattccag
aaaactgctaagaaaagaagcaagaagaaagatgccaaaagtggaacaattgaagatgat
gctgattacaaaaagtttttggagtcctacaatggtgatgaggaaaaatttccttccaac
cctgagactttgcttgaggaaatagaggccaagactaaggaacttagtgctaaaaaaacg
acacctctcttggacttcctaaagaataaacagaggattagagaagaaaagaaagaagag
aggagacggagagaactagaacgtaaacgcctgcgagatgaagaaaggcgtaagtggaga
gaggaggacagaagaaaaagaaaagaggctgagaaattaaaaaaaggagaaaaggcatct
gataaggataaggaccaacctaaagatgaacagccaaaaattaagctcttgaaaaaaaca
gagaaagcagatgatgttgatactgagaagccaaaggacaaggccaagaaacaagaccga
gagaaacaaaaggaagatcgacctcctggaggaggagaaacaaagaagcggcagaatggt
gaacacagagaggagaaagggggaaagtcagaggatagtgggcataaaaattacagagat
cgcgatggagaccgagagcgggagcgggacagagagagagagcgaagacagaaagacaaa
gaacgtatcagaaggcaggatgaagaacggaggaaaagggaacgtcaggatagagaaaac
acctacagaaagagagacgaggaggggaagaaggacaaggagcgtgtttgggagaaaagg
aagaatgaaaacaccggagagtcctccgttagtgctcatcctgaaaagccttcaagggac
agcagaaaagaagacagtgctaaaagagaccgtctgagaaataaggatcggcctacaatt
cagctgtaccagcccggggcgaggagccgtaaccggggcggaggaggaacaggaggagat
ggacagggagaggagaagagagctgagcgggagaccaagaacactcaagagaaagctgct
gagtga
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