Carassius gibelio (silver crucian carp): 128027352
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Entry
128027352 CDS
T08819
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03320
PPAR signaling pathway
cgib04148
Efferocytosis
cgib04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128027352
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
128027352
03320 PPAR signaling pathway
128027352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
128027352
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgib03310
]
128027352
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
128027352
Nuclear receptors [BR:
cgib03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
128027352
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
128027352
NCBI-ProteinID:
XP_052470859
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Position
A2:14597116..14617415
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AA seq
441 aa
AA seq
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MDNNDTYLHFSSSLQVTHGHLSSPPSQPPLGSLVSHHHPSIINGLGSPYSVITSSSLGSP
SASMPTTSNMGYVALNSPQMNSMNSVSSSEDIKPPPGLVGPGSYSCSSPGSLSKHICAIC
GDRSSGKHYGVHSCEGCKGFFKRTIRKDLTYTCRENKDCQIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRGREKSDNEVESSSSFNEEMPVEKILDAELAVEPKTDAYIESSTGNST
NDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVK
DGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAK
GLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQIT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggataataacgacacatatctgcattttagttcttctttgcaggtaacacatggtcac
ctgagctcccctccatcccagcctcctctcggctccctggtgtcccaccatcacccctcc
atcatcaacggtctagggtcgccatactcagtcatcacttcttcctccctgggctcacct
tcagcctccatgcccactacctccaacatgggctatgtagcgctcaacagtccacagatg
aactctatgaacagtgttagcagttcagaagacattaagcctcctccaggactggtggga
ccgggcagttactcctgcagcagcccgggatccctgtccaaacacatctgtgccatctgt
ggagaccgatcctcagggaaacattatggtgttcacagctgtgaaggatgcaagggcttc
ttcaagagaaccatccggaaagaccttacatacacgtgtcgagaaaataaagactgccag
atcgacaagcgccagcgtaaccgctgccagtactgccgctatcagaagtgtctagccatg
ggcatgaagagagaagcggtgcaggaagagaggcagcgcggtcgggaaaagagtgataat
gaggtggagtctagcagcagctttaatgaggagatgccagtggagaagatcctggatgct
gagcttgcagtggagcccaagactgacgcttacattgagtccagcacaggcaactcgaca
aatgacccagtgaccaacatctgccaggctgcagacaagcagctctttactcttgtggag
tgggctaagagaatcccgcacttctctgaccttcctctggatgaccaggtcatcctgctg
cgagcaggttggaacgagctgctcattgcttcattctcacaccgttctgtgacggttaaa
gacgggatccttttggccactggcctgcatgtccaccgcagcagtgctcacagcgcaggg
gtcggctctatatttgacagggtattaacagagctggtgtctaagatgaaggacatgcag
atggacaagacggagctgggctgtctaagagctatcgtcctctttaaccccgatgctaaa
ggattgtcaaacccgtcagaggtcgaggcattacgggaaaaagtgtacgcctcactggag
ggctacaccaaacacaactaccccgaccagcccggcaggtttgccaagctgctcctccgt
ctgcccgctctgcgctccataggactgaagtgcctggagcacctgttcttcttcaaactt
atcggagacacacctatagacactttcctcatggagatgctggaagcgccgcatcaaatc
acatga
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