Carassius gibelio (silver crucian carp): 128027568
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Entry
128027568 CDS
T08819
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128027568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128027568
Enzymes [BR:
cgib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128027568
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128027568
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128027568
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_14
LRR_8
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
128027568
NCBI-ProteinID:
XP_052471257
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Position
A14:complement(13702288..13714742)
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AA seq
555 aa
AA seq
DB search
MPKEKYDPPDSRRMYTIMSSEEANSGKKSNWDGLEITGNVRSLSSSLWSLTHLTALHLSD
NSLSRIPPEITKLHNLVFLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLTQEIMTLYQEPDGTRQLLNYLLDNLAGAIKRKPPPSRSWIVLQEPERT
RPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEIVSCNADIISLQEVET
EQYYNYFLLELTKRGYDGFFSPKSRARTMSESDRKHVDGCAIFYKIEKFSMVQKHTVEFN
QLAMANSEGSEAMLNRVMTKDNIGVAVLLELKEELIELSSGKSTLAMEKQLLLVANAHMH
WDPEYSDVKLVQTMMFLSEVKNIIDKASCSLKLSSVSGETSSIPLVLCADLNSLPDSGVV
EYLSTGGVDCTHKDFKELRYSDSLTNFNCNGKNGTSNGRITHGFKLKSAYENVLMPYTNY
TFDFKGVIDYIFYSRPQLNVLGVLRPLDTNWLLENNISGCPHPHIPSDHFSLFAQLELVL
PYTPLLNGVHLAGHR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagagaaatatgacccgcctgattccaggcgaatgtacacgatcatgtccagt
gaggaggcaaacagtgggaaaaaatccaactgggacggccttgaaataactggtaatgtt
cggagtctcagctcgagcctttggtcgctcactcacctcactgctctgcacctcagtgac
aactccctgtcacgcatcccacctgaaattaccaagctgcacaaccttgtgttcttggac
ctgtcatccaataagatcaggagcctgccagcagagcttggcaacatggtgtctctcagg
gaactacttttaaataacaaccagttgcgggttctgccgttcgaattggggaaactgttt
cagttacaaacactggggttgaaaggcaatccactcactcaagaaattatgactctctac
caggagccagatggtacccggcaactgctgaactaccttttggacaatcttgctggtgct
atcaagcgcaagccccctccgtccaggtcctggattgtgctgcaggagcctgaaaggaca
agaccaaccgctctgttaactgtgatgtgctataatgtgctgtgtgataagtacgccaca
cgccagctctacggctactgcccttcctgggcccttaactggagctacaggaaaaagtcc
attatgcaggagatcgtcagttgcaatgcagatattatcagcttacaggaagtggagaca
gagcagtattacaactacttccttttggagctgactaaacggggatatgatggattcttc
agcccaaaatcccgggccagaaccatgtctgaatcggacaggaaacatgtagatggatgt
gcaatattctacaagattgaaaagttcagcatggtgcagaaacacacagtagagtttaac
cagctggctatggccaattcagagggctcagaggctatgctgaatcgtgtcatgaccaaa
gacaacattggagtggctgtgttgcttgagctaaaggaggagttaatagagttgtcgtca
gggaaatctacccttgctatggagaaacagctccttctagtggcaaatgctcacatgcat
tgggacccagaatattctgatgtgaagctggtgcagaccatgatgttcctgtcagaggtg
aagaatatcatagacaaagcctcctgtagtctgaagctgtcctccgtatctggagaaacc
agcagcatccctttggtgctttgtgccgacctcaactcacttcctgactcgggtgttgtg
gagtacctgagcacaggtggggtggactgcacacacaaagacttcaaggagctgcgctac
agtgacagtctgaccaacttcaactgcaacggcaaaaacggcacatctaacgggaggatc
acacatggtttcaagctgaagagtgcctatgagaacgtgcttatgccttacaccaattac
acttttgacttcaagggtgtcattgactacatcttctactccagaccacaactgaacgtg
ctgggtgtcctcaggcctttggacacaaactggctcctggagaacaatatcagtggttgc
ccacaccctcacatcccctcagatcacttctccctgtttgcacaactggagttggtcctg
ccttatactccccttctcaatggagtccacttagctgggcacaggtag
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