Carassius gibelio (silver crucian carp): 128029142
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Entry
128029142 CDS
T08819
Name
(RefSeq) nucleoporin NDC1-like isoform X1
KO
K14315
nucleoporin NDC1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128029142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128029142
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128029142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Curto_V3
Motif
Other DBs
NCBI-GeneID:
128029142
NCBI-ProteinID:
XP_052472680
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Position
A2:complement(17414355..17422762)
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AA seq
674 aa
AA seq
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MIKMFSPKQNCWFIRKVVMWRAVASIAWSVLLLPVTTAVFVLLSRFRLFHPIQWISECIH
LLTASSTIFSLVLLCGVVLITGLFNLEFYTLVPSIPCSRMALLGTVLHPRQCVHSLVYCS
MGMLMMWCASVTIGGRYSTLGIPCRQSESGEVVACLNEYHLFLLLAGAFMGYSHSFLGVV
QNMYYVSFQPIQQYKYPRFKGCLSMVVKCSVIQSLYSARNFAALYFFFGYVPKTWISSTL
HLQIDSSVQPLDALTGLLDFSLLYHLSISGSFLYFTWYLTVLLFRIYVTEAYSFPVQSTF
TEDAAQCLPKVLPGTNSLVMKFLALQDLALLSQHSLSRRLEVFSLSQPGGHPHNWNAISG
ECLSLLSELTQRLVAHQDAVASNGRVKSQSASSDTRSASSSSSVVSGTEDIAESPRLSVP
LRTPGSVFRSSVGVWHSALTAPFTPDLDSPFSSPAIRRLVGQQEPRSPWFGTVQSPHVMR
RGPKLWSASTESQSNSSPPASPATVPSSPAADQKPSFLAQWLQNRREQVKSFLAKRVLIV
FLFNKLPEASSQALFADSQAHIWALQGLSHLVAASFSEDQFGVVQTTLPSILSCLVVLLE
AVDRHFKLPHASSKPGRTICSMGDSTYKTLRFALRAALKTAIYKITTSFGEHLNAVNIST
EHRKRLQQFLEFKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaatgttttcgccgaaacaaaattgttggtttataagaaaggtggtgatgtgg
agggcagtggcgagcattgcatggtcagtgcttctcttgcccgtgaccactgcagtattt
gtgctcttgagtagattcagattgtttcaccccatccagtggatttcagaatgcatacat
cttcttacggcctcaagcaccatcttttcccttgtgctgctatgtggagtagttctgatc
actggccttttcaacctggagttttacactttggttccctccattccttgttcacgcatg
gctctcctggggacggtgcttcacccacgacaatgtgtccattctttggtctactgcagc
atgggcatgctgatgatgtggtgtgcttctgttacaatcggtggacgttacagcactctg
ggaattccctgcaggcaaagtgagagtggtgaagtagtggcctgtctgaatgagtatcat
ctctttcttctcctggctggggccttcatgggatacagtcatagtttcttgggagtggtt
caaaatatgtactatgtgtcctttcaacccatacaacaatacaaatatccacggttcaag
ggctgtctgtcaatggtggttaagtgcagtgttattcagtccttgtattcagccaggaat
tttgctgctctctatttcttttttgggtatgttcctaagacctggatctccagcacactt
catctgcagatagacagttctgtccaaccactggatgcactgactggacttctagatttc
tccctcctttatcacctgtcgatcagtggctctttcctgtatttcacctggtatctcact
gtgcttctcttcaggatttatgtcacagaggcctacagttttccggtgcagtccacattt
actgaggatgcagcgcaatgtcttcccaaagttttgcccgggacgaacagtttagtcatg
aagttcttggctctgcaagacctggctctgttatcacaacattctctctcacgcagacta
gaagtcttcagtctgagtcagccaggtggtcaccctcataactggaatgccatcagtggg
gaatgtctgtctttgctgagtgagctgacacagagactggtggctcatcaggatgcggtt
gcctctaatggccgagtcaagtctcagtctgccagcagtgacaccagatcagcttcttca
agcagctcagtggtgtcaggaaccgaggatattgctgagagccctcgactcagtgtcccg
ctaaggacccctggttcagtcttcaggtcatcggtgggggtttggcacagtgctttgact
gctcctttcaccccagatctggacagccctttctcttcccctgctatcagacgtctggtt
ggccaacaggaaccccggtcaccctggttcggtacagtacaaagcccccatgtcatgagg
agagggcccaaactgtggagtgcctccacagagtcacaatccaatagcagtcctcctgcc
tcccctgccactgttcctagttctcctgcagccgatcagaaacccagtttcctggcccag
tggctgcagaacaggagagagcaggttaaaagctttttggcaaagcgggtgctgatagtg
tttttatttaacaagcttccagaagcctctagccaagctctgtttgctgacagccaggct
catatctgggctctccaaggactatctcatctggtggctgcctctttctctgaggatcag
tttggagttgtgcagacaacattacccagtatccttagctgcttggtggtcttgctagag
gctgttgacagacactttaaactgccacatgcctccagcaaacctgggaggactatctgc
agtatgggtgactccacatacaaaactctaaggtttgcactgagggcggcgctgaagacc
gccatctacaagataactacatcttttggagagcacttgaatgctgtgaatatttcaaca
gaacatagaaaaaggcttcagcagttcttggaatttaaggaatag
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