Carassius gibelio (silver crucian carp): 128029183
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Entry
128029183 CDS
T08819
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03030
DNA replication
cgib03420
Nucleotide excision repair
cgib03430
Mismatch repair
cgib03440
Homologous recombination
cgib03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128029183
03420 Nucleotide excision repair
128029183
03430 Mismatch repair
128029183
03440 Homologous recombination
128029183
03460 Fanconi anemia pathway
128029183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
128029183
03032 DNA replication proteins [BR:
cgib03032
]
128029183
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128029183
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128029183
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128029183
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128029183
MMR (mismatch excision repair)
128029183
DSBR (double strand breaks repair)
HR (homologous recombination)
128029183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Por_Secre_tail
Motif
Other DBs
NCBI-GeneID:
128029183
NCBI-ProteinID:
XP_052472753
LinkDB
All DBs
Position
A15:10951925..10973799
Genome browser
AA seq
602 aa
AA seq
DB search
MTVRLSEGAIESLTKGTEVNNPVLQCVNIRKIDGGNGLSRFRVMMSDGLHTMSSFMLSTQ
LNPMAEQEQLAPNCVCMLKRSVTNILKDGRRVIVILDIEVIKSADQMAGKIGDPTPYVEG
QSKQQSTAPAPTVRPLQPQNGNDGSMNRPSAQSFGKKPMAAPSTPGGSSKVVPISSLNPY
QSKWTVRARVTNKSAIRTWSNSKGDGKLFSMELVDESGEIRATGFNNEVDKFYSIIEQGK
VYYISKGSLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPKVQCDFVSIADLESREK
DTIVDVIAVCKNTEDVTRITTKNSREVSKRNIQLMDMSGKVIQLTMWGNDAETFDGSGQP
ILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLQGWYDKEGHAIDGQSMTELRGPG
GGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACSSKDCNKKVVDQQ
NGMYRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAETLLGQNASYLGQLKDSN
EAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDVKPVDHREYSKRLIINIRKLA
AQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgttcgattgtcagagggggcaattgagtccctgaccaaaggaactgaagtcaac
aaccctgttctgcagtgtgtgaacattcgcaagattgatgggggaaatggcctgtctcgt
ttccgtgtcatgatgagtgacgggctgcacactatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaagaacagttggcccctaactgtgtgtgtatgctgaaaaga
agcgtcactaatattctcaaagatggacgacgtgtgatagttatactggatatagaggtg
atcaagtctgctgaccagatggcaggaaaaattggagacccaactccttatgtggagggc
cagtcaaagcaacagagtacagctccggctccaactgtgcgtccattacagcctcagaat
ggaaatgatggttcaatgaacagaccttctgctcagagctttgggaaaaagcccatggct
gcccccagcactcctggaggcagctcaaaagttgtgcccatttccagtctcaatccatac
cagtcaaaatggactgttagagccagagtcaccaataagagtgccatccgcacatggagt
aactccaaaggggatgggaagctcttctccatggagcttgttgatgaaagcggggagatt
agagcaactggatttaataacgaagtggacaaattctactcgatcattgagcagggaaaa
gtctactacatctcaaaaggcagcctgaagattgctaacaaacaattctcctcacttaag
aatgattatgaaatgactctcaatggcgagacaagcatcatcccttgtgaggacagccat
gacgtccccaaggtgcagtgtgactttgtttccattgctgacttggagtcccgggagaaa
gacaccatcgtagatgtgattgcagtttgtaaaaacacagaggatgtgacgcgcatcacg
accaagaacagtcgagaggtttcgaagaggaacatccaactgatggacatgtccggcaaa
gtcatccagctcaccatgtggggtaacgatgcagagacgtttgatggcagtgggcagcct
atcttggccattaagggagcaagattgtctgactttggtgggcgttctctctccactctt
tacagcagcacggtcatgatcaaccccgacattcctgaggcatacaaactgcagggatgg
tatgataaggaaggacatgctatagatggccagtcgatgactgagttaagaggacctggc
ggcggtggtggaaacacaaactggaagacacttgcggaagtcaagaatgagcacttagga
catggagacaaagctgattatttctcttgcatcgccaccatagtctatatccgtaaagag
aactgcttgtatcaggcctgttccagtaaagactgcaacaagaaggtggtggaccagcag
aacggcatgtaccgctgtgagaaatgcgacaaagagttccccgacttcaaataccgtctc
atgctctcggccaacattgctgattttggagacaaccaatgggtgacttgctttcaggac
agtgcagagaccctcctgggccagaatgcaagttatctcggccaactcaaggactcaaac
gaagctgcatttgatgaggtctttcagcatgcaaacttcaatacttttgtcttccggaac
cgagtgaagctggagacctacaatgatgaatctcgtattaaagtgaccgtggtggacgtc
aagccagttgaccatcgagaatacagcaaacggctgatcatcaacataaggaagttggct
gcacagtag
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