Carassius gibelio (silver crucian carp): 128029229
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Entry
128029229 CDS
T08819
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04270
Vascular smooth muscle contraction
cgib04625
C-type lectin receptor signaling pathway
cgib04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
128029229
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
128029229
09153 Circulatory system
04270 Vascular smooth muscle contraction
128029229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgib04131
]
128029229
Membrane trafficking [BR:
cgib04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
128029229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
128029229
NCBI-ProteinID:
XP_052472832
LinkDB
All DBs
Position
A15:complement(12797818..12845854)
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AA seq
1383 aa
AA seq
DB search
MSDTRSPVTNRTSSILSRDPLPDKRPKSEKLPGTSTHEFDPTDVLVQKSGFVVADRRPES
FGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKQDGAAMRAGVQTGDRIIKVNGTFVTQS
NHVEVVKLIKSGSYVALTVLGQPPGLPQIPLSEVDVGLGSPGGYEDPFVTSPNSYNAAER
TSPFVSWEENSAPLNQIMGNKRMVSKDQQDIQGLKADCSRTPTCRPLQDIQEAKKHIPHQ
QGHIHESLCVRNSEDGFWADENRYKGDFSPEGLWSGSSVSFVQRRFYPASPESQRDSSCS
SPKSTPRDSLNSCPSPDVEDGSDLETRVSSTVGNPFSQPASEIIAAEDDDFDIEQEQVNG
QCSCFQSIELLKTRPAHLAAFIHHVISQFDPAPLLCYLYAELYKHTNSKETRRIFMDFLT
FFIDRGANLKVAVPESISSELERRRPELIPEELHRQYLQTMQETLLPDVQRNLEDFRQKR
SMGLTLADVELSRLDFQQLALERERSCAENILSKIDDILLTSQTTEEEKCNSIQYVIFMY
MKHLGVRVKEQRNLESKRVRLHFLPSKLRKSKTEKEGEEKKKPRFPIRVPQRWPSRIDSV
PSGKAGDNIKHRPQKQMSQPALGGSDLIEGGRLRGSQSSEGSDLLQSPSLISSPPFSALY
SSPSDPSGKDLEFNMSSSVVVPRLSDGLQSGDVLDNIYQPCDDIPYNMDQLDEDGYRLLD
VGTPKLSRRFEELQSEDDQGSDVYSDVDPPNWQQVVRRDVLAGLAPHEIKRQEVINELFY
TERTHVHMLKVLDSVFYQKLTRENILPPADIKNIFTNLEEIIQLHMRIADQMTAIRKKNE
SSVIGHIGDELLSWFSGGEEEKIKQAVGTFCSNQPFALELIKSRQKKDQRFTSFVQEAES
NRLCRRLQLKDIIPAEMQRFTKYPLLMDNIVKYTDESEEKDKVRRAAESCRLILSHVNQS
VKESENKQRLEDYQRRLDLSSLKQSENPMISEFKNLDLTKRKMVHEGPLSWKINKDKTIE
LYTLLLEDILVLLQKQDERLILRCHSKNLAGTADTKHIFSPIIKLSTVLVRSVATDNRSF
FVISMSKNGAQIYELMAQTVSEQRMWQQEIAQRADVTNVKPHSVIPLPQHDGDRDSVELS
KFSKGSEQISTGSIQATEKDSESLPTAALQDCVPDANPGEEDRVPRAGRDGSYLDGRDTD
SLSCSSKADEALKTLSALKQVLVTQLMAQDEGERLGRSAGSRLLRTTSLRTPVEHSSTRA
PSRAQDYTSGDTGFYECPEDYAAYLVLEGYGGPGESSTDDDIQVGRKESSLAHSCAADSG
ISLKFSSPSSGSTSRLSREVLSHLRCLQANLNHLKEMETKYYNLLRQKPVGSTADTDESR
DKK
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacggtccccagtcactaacagaaccagtagcattctcagcagagacccc
cttcccgacaagaggccaaaaagcgaaaagctgcctggtacctctacacacgagtttgac
cctacagacgtgttggtgcagaagagtggatttgtagtggctgacaggagacctgagtct
tttgggctggttcagagatgcgtgatcattcagaaagatgaaaacggctttgggctgacc
gtcagtggggacaaccctgtttttgtgcagctcgtcaaacaggatggcgctgccatgcgt
gcaggtgttcagacaggggacaggatcattaaggtgaacgggacatttgtgacgcaatcc
aaccatgttgaagtggtgaaattgattaaatccggctcatatgtggccctcacagtatta
ggccagcctcccgggttgccccagatccccctctctgaggtggacgtgggtctcgggtca
ccggggggttatgaggacccttttgttacatctcccaactcatacaatgcagcggaacgc
acctctccttttgtgtcatgggaagagaacagtgctccactcaaccaaataatgggcaac
aagaggatggtgtccaaggatcaacaggacatacagggactgaaggcggactgcagcaga
actcccacatgcagaccactacaggacatccaggaagccaagaagcacattccacatcag
cagggccatatacatgagagtctgtgtgtcaggaacagtgaagatggcttttgggcggat
gagaatcgatataagggagatttcagcccagagggtctctggagtggaagttcagtgtca
tttgtccagcgccgattctacccagcctctccagagagccaaagggactccagctgttcc
agtccgaagagcacccccagagacagcctcaattcctgcccctcccctgatgtcgaggac
ggctctgacctagagactcgtgtctcatccaccgtagggaacccattctcccaaccggct
tcagagatcattgctgctgaagatgacgactttgacattgagcaggagcaggtgaacggc
cagtgcagctgcttccagagtatcgagctgctcaagactcgtcccgctcatcttgctgcc
ttcatacaccatgtgatctctcagtttgaccctgcacctctgctctgctacctgtacgct
gagctctacaaacataccaactccaaagaaacacggcggatattcatggacttcttgacg
ttcttcatagaccgaggggcaaatttgaaagtcgctgtgcctgaatccatctcctctgag
ctcgagcgtcggagaccagagctgataccagaggaattacacaggcaatatttacagaca
atgcaggaaactctccttccggatgtacagagaaacttggaggacttcaggcagaagcgc
agtatgggcttgaccctggctgatgtagagctgtctcgtctggactttcaacagctggct
ctagagagagagagatcatgtgctgaaaacatcctatccaagatagatgacattctgttg
acttcacaaaccacagaagaggagaaatgcaactccatacagtatgtgatctttatgtac
atgaagcatctgggagttcgggtgaaagaacaacgaaacctggagtccaaacgagttcga
cttcattttcttccttccaaactaaggaaaagcaaaacggagaaggaaggggaggagaag
aaaaagcctcgctttccgatccgggtgccccagcggtggcccagtcgcatcgattcagta
ccatctgggaaggccggggacaacatcaagcatcggcctcagaagcagatgtctcagcca
gctttgggcgggtcagatctgatagagggtggacgtctgcggggcagtcagtcgagtgag
ggctcagacctcctacagagccctagtttgatcagctctccccccttcagcgccctttac
agttcaccgtcagacccctctggcaaggacctggagtttaatatgagctcgtctgtggtg
gtcccccggctcagtgatgggctgcagtctggagatgtgctggacaacatctaccaaccc
tgtgatgacatcccatacaacatggaccagctagatgaagatggatacagactgcttgat
gtgggcacacctaaactgagtagaaggtttgaagagttgcagagtgaggatgatcagggg
agtgatgtttactctgatgtagatcctcctaactggcagcaggtggtcaggcgtgatgtt
ttagcaggcttggcgccccacgagatcaagagacaagaagtcattaatgaactgttctac
acggagcgaacccatgtacacatgctgaaggtcctagacagtgtgttctaccagaaactt
acccgagagaacatactgccccctgctgacatcaagaacattttcaccaacctggaggaa
atcatccagttgcacatgaggatagcagatcaaatgacagcgatacgcaagaagaacgag
tcatcggtcatcggccacataggagatgagttgctgtcttggttcagtggtggagaggag
gagaagatcaagcaagcagtgggcactttctgcagtaaccagcccttcgccctggagctc
atcaaatcccggcagaagaaggaccagcgtttcacctccttcgtgcaggaggctgaaagc
aatcgactgtgtcgacgattacagctaaaggacatcatccctgcagagatgcagaggttc
acaaagtaccccttactgatggacaacattgtcaagtacacagatgagtcagaggagaaa
gacaaagtgagacgagcagcagaaagctgtcgactcattctcagccacgtcaaccagtcc
gtgaaggagtcagagaataaacagagactagaggactaccagagacggctggacctgtct
tccctcaagcagagcgagaaccccatgatctcagagttcaagaacctggatctcactaaa
aggaagatggtccacgagggtcctctgtcctggaagattaacaaagacaaaactattgag
ctgtataccttactcctggaagacatcctggtgttgctgcagaagcaggacgagcgttta
attctcaggtgtcacagcaagaacctcgcaggaacggctgacacaaaacacatattcagt
cccatcatcaaactcagcactgtgctggtgcgctcggtggcgacagataacagatcattc
tttgtgatctccatgtccaaaaacggagctcagatttatgagctgatggcccaaacagtg
tccgagcagagaatgtggcaacaggagattgctcaaagggcagatgttacgaacgtcaaa
ccccacagcgtcattcctttgcctcagcacgatggtgacagagacagtgtggagttaagc
aagttcagcaaaggctctgaacagatctccacaggaagcatccaggccacagagaaagac
agtgaaagcttacccacggcagccctgcaggattgtgtccctgacgccaaccctggggaa
gaggaccgggtcccgagagctggcagggatggctcgtatctggacggcagggacacagac
tctctatcctgctcgtctaaagcagacgaggcccttaaaaccttgtccgcgctgaagcag
gtgctggtgactcagctgatggctcaggatgagggcgagcgattgggcagatcagccggc
agtcgtctcctcaggaccacctctctacgcacaccagtggagcacagctccacgcgtgcc
ccaagtcgagctcaggactacacctctggagatacaggcttctacgagtgcccagaggac
tacgcagcttacctggttctggaggggtacggtggcccaggcgagagcagtacagatgac
gatattcaggtcgggagaaaggagtcgagtttggcccacagctgtgctgctgactcgggc
atcagcctcaagttctcctcgccctcctcaggcagcacgtctcgcctcagcagagaggtc
ctctcacatctacgctgcctgcaggccaacctcaaccacctcaaggagatggaaacaaag
tattataatctgcttcgccaaaagcctgttgggtcaacagcagatacggacgagagcaga
gataagaaatag
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