Carassius gibelio (silver crucian carp): 128030292
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Entry
128030292 CDS
T08819
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128030292
09123 Folding, sorting and degradation
03018 RNA degradation
128030292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128030292
03041 Spliceosome [BR:
cgib03041
]
128030292
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128030292
mRNA cycle factors
Stress granule specific factors
128030292
Spliceosome [BR:
cgib03041
]
Complex C
Other components
Complex C specific factors
128030292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_10
RRM_5
RRM_3
RRM_occluded
YflT
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
128030292
NCBI-ProteinID:
XP_052473744
LinkDB
All DBs
Position
A16:complement(884822..893644)
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AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLREVFSKFGPALSIRVMTDDGGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQGMPNAVRPSGPRPQAFGAVRPASQVPRVIAPQ
RMASQAMGPRPSAAGAPTGTSQVRGVPQYKYTPGVRNPAQHMPSQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTPSSAVQAV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcctctctgtatgtgggggatctgcaccca
gatgtgacggaggccatgctgtacgagaagttcagtccagctggacccatcctctccatc
cgggtctgcagggacatgatgacgcgccgctcgctcggttacgcctatgtcaacttccag
cagcccgccgacgccgagcgcgccctggacacgatgaacttcgacgtgatcaagggccgt
ccgctgcgcatcatgtggtcccagcgagacccgtccctgcgcaagagcggcgtgggaaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctgtacgacacgttctct
gccttcggaaacatcctgtcctgcaaggtggtttgtgatgagaacggctctaaaggatac
ggctttgtgcactttgagacccacgaggctgcagaaagagccattgagaaaatgaacggc
atgttgctcaatgatcgcaaagtgttcgtgggtcgcttcaagtctcgtaaggagcgcgag
gcagagatgggcgcccgcgcgaaagagttcaccaacgtttacatcaagaacttcggagaa
gatatggatgacgagaagctgagggaggttttcagcaagtttggtccagcgctcagtatt
cgagtcatgacggatgacggcggtaaatctagaggctttggcttcgtcagcttcgagagg
cacgaggacgcccagaaggccgtggatgagatgaacgggaaagagctgaacgggaagcag
gtgtacgtggggcgcgctcagaagaagggagagcgtcagacggagctcaaacgcaagttt
gagcagatgaagcaggaccgcatgacgcgctaccagggagtcaatctctacgtgaaaaat
ctggacgatggactcgatgatgagcgtctgcggaaagagttctccccgttcggcaccatc
accagcgcaaaggtgatgatggaaggcggccgcagcaggggcttcggcttcgtctgcttc
tcgtctcctgaagaagccactaaagcggtgacggagatgaacggtcgtatcgtggccacc
aagccgctgtatgtggctctggctcagaggaaggaggagcgtcaggctcatctcaccagt
cagtacatgcagaggatggccagcgtcagagccgtgcccaaccccgtcctcaacccctac
cagccagcgccaccttcaggatacttcatggctgcgatcccacaggctcagaaccgtgca
gcttactatcccaccagtcagctcgctcagctccgccccagtcctcgctgggccactcag
ggggtccgccctcagcatttccagggcatgccgaacgccgtcagaccctcggggccccgt
cctcaagccttcggggccgtgcgtcccgcctcacaggtcccgcgggtgatcgcgccccag
cgcatggcgtctcaggccatgggccctcgccccagcgccgcaggggcccccacagggacg
tctcaggtgagaggagtgccacagtacaagtacacacctggagtccgcaacccagcgcag
cacatgccctctcagccgcaggtgcccatgcagcagcctgcggtccacgttcagggtcag
gagcctctgaccgcgtccatgctggctgccgcccctccacaagaacagaagcagatgctc
ggtgagcgtctgttcccgctcatccagaacatgcatcccagtctggctgggaagatcacc
ggaatgctgctggagatcgacaactctgagctgctgcacatgctggagtctccggagtct
ctgaggtcaaaggtggatgaagcggtggcggtgctgcaggctcatcaggctaaagaagct
gcgcagaagacccccagcagcgctgtgcaggccgtctaa
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