Carassius gibelio (silver crucian carp): 128030845
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Entry
128030845 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128030845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128030845
03036 Chromosome and associated proteins [BR:
cgib03036
]
128030845
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128030845
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128030845
mRNA degradation factors
5'-3' decay
Decapping complex
128030845
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128030845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Terminase_3
Motif
Other DBs
NCBI-GeneID:
128030845
NCBI-ProteinID:
XP_052474848
LinkDB
All DBs
Position
A16:13141275..13149434
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AA seq
483 aa
AA seq
DB search
MATARTEIPSSVMPMSKQNGQSKPMTLQSGSLTSSTQSGKTPVMPQKGSSIHQSSGGIRF
GDDWKKCLQLPPKDLRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IVLSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYVQAIVFVPTRELALQVSQISINMS
KHLGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVDKAQMIVMDEA
DKLLSQDFVVLIEDIISFLPKKRQILLYSATFPVSVQKFMSKHLQKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRY
GHLGLAINLITSEDRFNLKGIEDQLMTDIKPIPSSIDKSLYVADFHTMNPDEEEAAHKAG
DLN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcgagaacagagatcccttcttcagtcatgccaatgagcaaacagaatgga
cagtccaagcccatgaccctccagtcaggatcgcttacttcctcgacacagtcaggaaaa
acacctgtgatgccccagaaaggaagcagtatacaccaaagcagtggcggtatcaggttt
ggtgatgactggaagaagtgcctgcagcttccaccgaaagacttgcgagtgagaaccaca
gatgtgactgcaaccaaaggaaacgagtttgaagattactgccttaagagggaactgctg
atgggcatcttcgaaatgggctgggagaagccttcccctatccaggaagagagtattcct
attgtgttgtcagggagggacattcttgcccgtgctaaaaatggcacaggtaaaagcgga
gcctacctcatccccctcttggaaaggattgacctgaaaaaggactatgttcaagccata
gtgtttgtacctactcgtgagttggctcttcaggtgagccagataagtatcaacatgagc
aagcaccttggtggcgtcaaagtcatggctacaacaggtggcactaacctgagggatgac
atcatgcgtcttgatgagactgtacatgttataatagcaaccccaggaaggatcctggac
ttgataaagaaaggtgtggccaaggttgacaaagctcagatgattgtgatggatgaggct
gataagttgctttctcaagactttgtggtgctcattgaggacataattagcttcctgccc
aaaaaacggcagattctgctctattctgccacgttccccgtcagtgtgcagaagtttatg
agcaaacaccttcagaagccgtatgagatcaatctgatggatgaactgacactgaaaggc
atcactcagtactatgcgtatgtgacagaaagacagaaagtgcactgtctcaacacactg
ttctccaggcttcaaatcaaccagtcaatcatcttctgtaactccacccaaagggtggaa
ctccttgccaagaagatcacacaacttggctattcctgcttttacatccatgccaagatg
atgcaggaatacagaaatcgcgtgttccatgacttcagaaacggactgtgtaggaacctg
gtctgcacagatcttttcacaagaggaattgacatccaggctgtcaatgtagtcatcaac
tttgacttccccaaaaatgcagagacatatctgcaccgcatcggtcgatcaggtaggtac
ggtcacctgggtttggccattaacctgatcacctcagaagatcgtttcaatctaaagggc
attgaggaccagctgatgactgacataaagcccatacccagcagcattgacaagagcctg
tatgtggcggattttcacaccatgaaccctgatgaagaggaggctgctcacaaagcaggc
gatcttaattaa
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