Carassius gibelio (silver crucian carp): 128031176
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Entry
128031176 CDS
T08819
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
128031176
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
128031176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
DUF4998
VWA_3
eIF-5a
Motif
Other DBs
NCBI-GeneID:
128031176
NCBI-ProteinID:
XP_052475379
LinkDB
All DBs
Position
A16:16954264..17058028
Genome browser
AA seq
1875 aa
AA seq
DB search
MVGKVQGKHHSHAIRMRVSGSRIKLWCPLISLALIQFLTPVSAQVPAPRRLRFKVLSAGR
LLVSWKEPKGEYDGYKFMYNTEPGGETRELQIARGENKAIIKDFNPGKEYSVKVISVTGN
LHSRALQGKYTAEDQSSDGDTPQPQRLKEPGPVEEGNEISGADQFVCTTSAIADIVILVD
GSWSIGRINFRLVRLFLENLVSAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDA
VKNLPYKGGNTLTGLALNYILENSFKPESGARSDVPKIGILITDGKSQDDVIPPAQSLRS
AGVELFAIGVKNADENELKAIASEPEETHVYNVADFSIMSTIVDGLTSKVCDGVEQQDKE
IIHSSTEETASPPQDLVTSEVTAHSFRVSWTHAPGSVEKYRVVYHPTGADILEEIVVGGT
KNSVVLQNLNSLTEYEIAVFAVYRSAASDALRGGEITLALPTVSDLKVYDVTDNSMRARW
RDAEGASGYMILYAPLSSETTDERELKVDESVTDVELTGLIPDSEYTVTVYAMFGEEASD
PATVQETTMSLRPPRNLQVTEVDHSSVRLNWDAASEEVKGYRVMYMKTDGVQTSEVDLGP
VINVYLKNLSPFTEYTVAVFALYDAGQSEALSGGFTTMLVPAPFSLMTSEVTSESFRVSW
SRPARDVVLYKMTWTPTEAGEEREMMLNGAVDSYVIQDLSPFTEYKVSLSAIYKDETESS
AVVVLENTLGQTTEVPTTFLSTTAFVHLGVINLWVDEETPFSMQVNWEVLDSRVDQYKVT
YVSADRTEETVLVSGNRRSVILQPLLSDTRYKITVTPFYADGESTALAMASTGKTLPLAG
PSNLRVSDEWYNRFRISWDSPPFPTVGYRVIYQPISVPGPALETFVGDDVNTLLILNLLS
DTEYSVQVIASYTTGSSQPLTSKGKTLFLGVNGLSTYQVLSSSMCAQWQPHHHATIYRVV
IESLLNGQKQEVRVGGGASRECFFNLSPDTQYKISVYSLLQDTEGPAVITMASTAPAPTQ
PPTAPPTTIPPPTIPPAKEVCKAAKADLAFLIDGSWSIGDDNFQKIIRFLYSTTGALDVI
GPEGTQVAIVQFSDDARTEFKLSSYGDKEALLDAVQRITYKGGNTKTGRAIKHVKDAIFA
EDAGARRGIPKVLVVLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPS
ERHVFFVDDLDAFKKIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSS
VQGVSMEPGTFNSYPCYQLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFAL
WEILDKNNEPLVGIILDNGGKTLTFFNSDYKGEFQTVTFDGSEIKKIFYGSFHKLHVAIS
KTAAKVVIDCKTVGEKSINAAGNITIDGVEVLGRMVRSGGRRANSAPFQLQMFDIVCSTS
WASRDKCCELPGLRVEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLT
GAQGPPGEIGPPGPQGPPGPQGPNGLSIQGSPGAPGEKGEKGEIGLPGPQGVPGASGGPG
RDGPPGQRGLPGNDGPQGRQGPPGPMGSPGAPGAPGPSGSPGQIGDQGPPGPSGTKGERG
ERGDMQSQAAVRAIARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVPGPPGESGRPGPP
GPQGEQGSPGRPGFPGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPPGPPGEGR
TGSQGSPGRPGIQGTSGRPGIPGSPGPAGPPGYCDQNSCLRYNVGVQQLPSNPYQNYDPA
TNYNNDEEEEDPYGGYRAYPPQYYQPGYPDPHAARFGPAHPGDMVGMRSAGTQRFSRSTA
QEGSVDESEVQVKAK
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaaaggtgcagggcaagcatcactcacacgctataaggatgcgggtgtcggga
tcgaggattaagctgtggtgtccgcttatctcgctggcactgattcagtttcttacccct
gtttcggctcaagttccagctccgcggagacttcgatttaaagttctgagtgcaggcagg
ctacttgtctcatggaaggaaccaaaaggagaatacgatggctacaaatttatgtataat
actgaaccaggtggggaaacaagggagttacaaattgcaaggggtgagaataaagcaata
ataaaggattttaatcccgggaaggagtattcagtcaaggttatatctgtgactggaaac
ctgcacagccgagcacttcagggaaagtatactgcagaagaccagagcagtgatggagac
acccctcagcctcaaagactgaaagagccaggacctgtggaagagggcaatgagatctca
ggagcggatcagttcgtctgcacaacgtctgctattgcggatattgtcatcctggtcgat
ggatcttggagtattgggcgaatcaatttccgtctggttcgcctgttccttgaaaacctg
gtcagtgccttcgatgtgggaatagacaaaacccggattggactggcccagtacagcggg
gatccacgaattgagtggcacttgaatggcttcagcacaaaagatgcagtaatagatgct
gtcaaaaacctgccgtacaagggaggcaacactctcacaggtcttgctcttaactacatc
ctggagaacagcttcaaacctgagtctggggctcgtagcgatgttcccaaaattggaatt
ctgataactgacggcaaatcccaggatgacgttatcccacctgctcagtccctgagaagt
gctggagtcgagttatttgccattggtgtgaagaatgctgatgagaacgagctgaaggcc
atcgcctctgaaccagaggaaacacacgtttataatgtggcggacttcagtatcatgagc
actatagtggatggcttgaccagtaaggtgtgtgatggagtggagcaacaagacaaagaa
attatacattcttccactgaagagacagcatccccaccccaagacttggtcacttctgag
gtgactgcacacagttttcgagtgtcttggactcacgcgcctggcagtgtggaaaaatat
cgggttgtttaccacccaaccggagcagatattctggaagagattgtggtgggcggcacg
aagaattcagtcgtcctgcagaatttgaactctctgactgaatacgagattgctgtgttt
gctgtgtaccgcagcgcagcaagtgacgctctgagaggcggcgagatcacgctggctctg
ccaacagtgagtgatctcaaggtgtacgatgtgacagacaacagcatgagagcccgctgg
agggatgcagaaggggcttctgggtacatgatcctttacgctccactgagcagtgagact
acagatgaaagagagctaaaggtggatgagtcggtgactgatgtggagctgactggattg
attcctgactctgagtacaccgttacggtctatgccatgtttggagaggaggccagtgat
cccgctactgtccaggagaccaccatgtccctgagacctccacgtaacctgcaggtcact
gaagttgaccacagctctgtgcgactcaactgggacgcagcgtccgaagaggttaagggc
taccgtgtcatgtatatgaagacagatggtgtccagaccagtgaggtggatttgggtcca
gtcatcaatgtgtacctgaagaacctgtcaccctttacagagtacaccgttgcagttttt
gctctctacgatgccggccaatcagaggcactcagtggtggattcactacaatgcttgtg
ccggccccgttcagcctgatgacatcagaggtgacctcagagagtttccgggtcagctgg
tcacgtcctgccagagatgtggtgctctataagatgacctggacccccaccgaagcagga
gaagagagagagatgatgctgaatggagctgtggactcatatgtgattcaagacctgagt
ccttttacagagtataaggtgtcactgtcagccatctataaagatgaaacggagagcagc
gctgtggttgtgcttgagaatacattgggccagaccacagaagttcccaccacttttctc
tccactacagcatttgttcatcttggagtgattaacctgtgggtggatgaggagaccccc
ttcagtatgcaagtgaactgggaggtgctggactctcgcgtcgatcagtacaaagtgaca
tatgtcagtgcagaccgcacagaagagacagtgttagtctcaggaaacagaagaagcgtg
atcctgcaacctctcctctcagacacaaggtacaagatcacagtgacccctttttatgca
gatggagagtccacagctctggccatggcctcaaccggcaaaacactgccacttgcagga
cccagtaacctacgggtgtctgacgaatggtataatcgcttccgcatcagctgggacagc
cctccgttccctactgtgggatacagagtcatctaccagccaatctctgtgccaggtccg
gctctagagacgtttgtaggggatgatgtgaacaccctgctgatcctcaatctgttgagt
gacacggagtacagcgttcaggtcatcgcctcctacaccaccggctccagccaacccctc
accagcaagggcaaaacattgttcctgggggtgaacggtctcagcacataccaggtgctc
agtagcagcatgtgtgcccagtggcaacctcaccaccacgccaccatctacagagtcgtc
attgagtcactgcttaacggtcagaaacaagaagtgagggtcggtggtggtgcatctaga
gagtgcttcttcaacctttcccccgacacccagtacaagatcagcgtctacagtctttta
caggacacagagggtccagccgtcatcacaatggcatccactgctccagcacccacccag
ccaccgaccgcaccacccaccacgatccctcctcccaccatccccccagccaaagaagtt
tgcaaagcagccaaggcagacctggccttccttatagatggctcctggagtatcggagat
gacaactttcagaagattatccgtttcctatacagcacaactggtgcgcttgatgtgatt
ggccccgagggaacacaggtggccattgttcagttcagtgatgacgccaggactgagttc
aagctcagctcctacggtgataaggaggctctgctggacgccgtgcagcgcatcacctac
aagggaggaaacaccaagacaggtcgggccattaagcatgtgaaggatgccatctttgct
gaggacgcgggcgcgaggaggggcattcctaaagtgttggttgtgctcacggacggacga
tctcaggatgatgtcaacaagatctctaaagagatgcagatggagggctatatcattttt
gccattggctttgctgatgctgactatggagagctggtgaacattgccagcaaacctagc
gagagacatgtgttctttgtggatgatctggatgccttcaagaaaattgaagaacagctc
ataacttttgtttgtgaggctgcgactgccacttgcccctcgatgttaatgagcgggaac
actttagctggttttcgtatgatggagatgtttggtttggtcgagaagcactacagcagt
gtgcaaggtgtctcaatggagcctgggactttcaacagctacccctgctaccagttgcac
aaggacgccctcgtctcccagcctaccaggtatctgcatccagaaggccttccctctgac
tacactatatctatgctgttccgcatactgccggaaactccacaggaaccttttgcatta
tgggaaatcctcgacaaaaacaacgagcccctggtgggcattatcctggataatggaggg
aaaacattaaccttcttcaattcggactacaagggagaatttcaaacggtgactttcgac
ggaagtgaaattaagaagattttctatggcagtttccataagcttcatgtggccatcagc
aaaaccgctgctaaggtggtgatcgactgcaaaacggtgggagagaaatccatcaatgct
gcagggaacatcaccattgatggagtggaggttctgggacgcatggtccgctcgggtgga
aggagagctaactcagcgccgtttcagctccagatgtttgacatagtctgcagtacatca
tgggccagtcgggataagtgctgtgagcttccaggcttgagagtagaagaggactgtcct
gccatgccccatgcctgcacctgtgcccaggatagcaaaggaccacctggaccctcagga
cccccgggcggtcctggtatcagaggttcaagaggagatcgtggggagccaggcttgacg
ggggctcaagggccacctggtgagattggacctccaggaccgcaggggccaccgggtcct
caggggccaaatggactgtccattcaggggtcaccgggggctccaggagagaaaggagag
aagggtgaaattggtctgccaggtcctcagggtgtaccaggtgccagtggaggaccaggc
cgagatggacctccaggacagagaggcctaccgggtaatgatggaccccagggacgacag
ggccctccaggaccaatgggaagccctggagcacctggggctccaggaccaagtggatcc
ccagggcaaattggtgatcaggggccacctgggccttccggcaccaaaggtgaacgagga
gagagaggtgacatgcagtctcaggccgccgtccgtgccatagcgcgacaagtttgtgaa
cagctaatacagagtcacttgtctcgctacaactctattttgaaccagattcccagtcag
tctgtttcagtacgaacagtaccaggtccaccgggtgagtctggtcggccaggacctccg
gggccacagggagagcagggttcccctggcagaccaggattccctggagccagtgggcaa
aatggccgcccaggagagagaggtctcccaggagaaaggggagagaagggcagtccaggg
atagggacacaaggccctcgtggtcctccagggcccccagggcctcctggagaaggtcgg
acaggaagtcagggctctccagggagacctggaattcaaggcacctcgggacgtccaggt
atccctggtagccctggtcctgccggaccccccggctactgcgatcagaactcctgcctc
agatacaacgttggagtacaacagttaccctccaatccctatcaaaactatgatcctgcc
accaactacaacaacgatgaggaggaagaggacccttacggtggctaccgtgcctaccct
cctcagtactaccaacccggttaccctgacccccatgcggccaggtttggccccgcccac
cctggtgacatggtggggatgaggtcagctggcacacaacgcttttcgcgcagcacggcc
caagaggggagcgtcgacgagtcggaagtgcaagtgaaggctaaatag
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