Colletes gigas: 122394758
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Entry
122394758 CDS
T07492
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122394758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122394758
03009 Ribosome biogenesis [BR:
cgig03009
]
122394758
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122394758
Spliceosome [BR:
cgig03041
]
Complex A
U2 snRNP components
U2 related factors
122394758
Complex B
122394758
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122394758
Ribosome biogenesis [BR:
cgig03009
]
Eukaryotic type
90S particles
Helicases
122394758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
AAA_25
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122394758
NCBI-ProteinID:
XP_043247806
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MSKRRIEVVDPYVKRKADGSTSNSTTAPSTAPKNQVQLNPYNGLPYTPRYHEFYKKRITL
PVFEYRTDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRCIGIKGVACTQPRRVAAM
SVAQRVSEEMDVALGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLDAYQVILL
DEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPV
EIFYTPEPERDYLEAAIRTVIQIHMCEDIVGDLLLFLTGQEEIEEACKRIKREMDNLGPE
VGELKCIPLYSTLPPNLQQRIFEPAPPTKPNDAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQENTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAGLDDDGNLTDLG
AVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFAH
IDGDHLTLLNVYHAFKQNIEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFCLKRTSTD
FTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEF
VLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaggaggatcgaggttgtggatccgtatgttaagcggaaggcggatggctcg
acatctaacagcacgactgcaccttcaacagcaccaaaaaaccaagttcaactcaatcct
tacaatggtctgccttacacaccaagatatcacgaattttacaaaaaaagaatcacatta
cccgtattcgaatatcgtactgattttatgagattattagcgcaacatcaatgtatcgta
ctcgttggggaaacagggtcaggtaaaaccacacagataccacaatggtgcgtagaatat
tcaagatgtattggcattaagggtgttgcttgtacacaaccgagaagagtagcggctatg
tctgtagcgcagagagtttccgaagaaatggacgtcgcattaggtcaagaagtaggatat
agtattcgtttcgaggactgtagttctccgaaaactgttttaaagtatatgacagatggt
atgcttcttcgcgaaggcatgtccgatcctatgctcgacgcgtatcaagtgatactacta
gacgaagctcacgaaaggactttagctacagacttacttatgggcgtgttgaaagaagtg
attaaacagagaccagatttaaaacttgtgattatgagtgcgactttagacgctggaaaa
tttcaacagtattttgataatgcacctttaatgaatgtacctggcagaacgcatcctgtt
gagatattttatacacccgaacctgaaagagattacttagaggctgctatcagaacagtt
attcaaatacatatgtgcgaagacatagtgggagacttacttttattcttgaccggtcaa
gaagagatcgaagaagcttgtaagagaatcaaaagagaaatggataatttgggtccagaa
gtaggggaacttaaatgtataccactctattctacattgcctccaaatcttcaacaaaga
atctttgaaccagcaccacctacaaagcctaacgatgctataggtagaaaagtagtagtt
tcaactaatattgcagaaacatcattgaccatcgatggtgttgtctttgtaatagatcct
ggatttgcaaaacagaaggtatataatcccagaattcgtgtagaatctcttctcgtatcg
cctatcagcaaagcttctgcacaacaaagagctggcagagctggtcgtacaagacccgga
aaatgtttcagattgtatacagagaaagcgtacaaaaatgaaatgcaggaaaacacttat
ccagagatattgcgatcaaaccttggtagcgttgtattgcaactgaaaaaacttggcatc
gatgatttggttcattttgactttatggatcctcccgcgccagaaactctgatgagagct
ttggagcttcttaattatttggcagggctggacgacgatggaaatctaacagatttgggg
gctgtgatggctgaattcccgttagatcctcagttagcgaaaatgctaatcgcatcttgc
aatcataactgcagtaacgagatacttagcattactgctatgctttcagtcccacagtgt
tttgtgaggccaaatgaatcaaagaaggctgcagatgacgctaaaatgcgttttgcgcac
atcgacggggatcatttaacgttgctgaacgtgtatcatgctttcaaacaaaacatcgaa
gacccacaatggtgttacgataatttcgttaattatcgatccttaaaaagcggtgacaac
gtcagacaacagctgagcagaataatggacagattttgtttgaaacgtacctcaacggac
ttcacatcaaaagattattacattaatatcagaaaagcgcttgtgaacggattctttatg
caggttgctcatttagaaagaactggccattatttgaccattaaagataatcaaattgta
cagcttcacccgagtagttgtttagaccataaaccagaatgggtaatttataacgagttt
gtgcttacgacgaaaaactatatcagaacagttaccgatatcaaacccgattggttgcta
aagatagcaccacaatattatgatttacaaaatttcccacaatgcgaagcaaaaagacaa
ttggaagtgattcaagcgaagctagactcgaaacagtatcaagaaggattctaa
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