Colletes gigas: 122395474
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Entry
122395474 CDS
T07492
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122395474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122395474
Spliceosome [BR:
cgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122395474
Complex C
U5 SnRNP specific factors
122395474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122395474
NCBI-ProteinID:
XP_043249025
LinkDB
All DBs
Position
Unknown
AA seq
2374 aa
AA seq
DB search
MSIPPYLLGPNPWATMMAQQQAHAQLAAAQAHAQAAAHAQAAHHAHMQAIAGPPLPQMPK
QPEVLSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPPEHIRKIIRDHGDMSSRK
YRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVY
IAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEED
ESVASWFYEHKPLVGTKHVNGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPK
SFFTAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYN
NMPHFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTVEPQIEDDEDFILP
EEVQPFLQETPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPV
KVRVSYQKLLKYFVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSH
VQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPV
GKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHF
DLELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILR
YVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYI
SPEEAVAIYTTTVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQR
EELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAY
LDQYLWYEADKRRLFPPWVKPSDTEPPPLLVYKWCQGINNLQDVWDVSEGECNVLLESKF
EKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIA
QYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRF
SADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRL
PRSTTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEIT
KERTAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR
WSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSR
PSLLADSKDLMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGL
LIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP
YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI
IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILR
ALHVNTERTKVVLKPDKTTITEPHHIWPSLTDDEWIKVEVQLKDLILADYGKKNNVNVAS
LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSN
YETQTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLR
AQIAGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQ
PNELPQLSPQDISTHARVMAENPIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQN
TDKGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANP
KEFYHEIHRPAHFLNFSSLEDGDGVGADREDVYA
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccaccgtacttgttgggtccaaatccatgggccaccatgatggcccaacaa
caggcccatgcccaactagcagcggctcaagctcatgctcaggcagctgcccatgcacaa
gctgcacaccatgctcatatgcaagctatagcagggccaccattaccacaaatgcctaaa
caacctgaagttttatccgaggataaacttcaagagaaagctcaaaaatggcaacaactt
caatcaaaaagatttgcagagaaaagaaaatttggctttgtagatgctcagaaagaggac
atgccaccggaacatattagaaaaattatcagagaccatggtgatatgagcagtcgcaag
tatagacacgataaacgtgtttatttaggagcactgaaatatatgccccatgcagtaatg
aaacttctggaaaatatgccaatgccttgggaacagattcgagatgtaaaggttttatac
cacatcacgggtgcaattacatttgtaaatgaaattccatgggttatagaacctgtatat
attgctcaatggggtacaatgtggattatgatgagaagagagaaaagagatcgcagacac
tttaaaagaatgagatttccaccgtttgatgacgaggaaccaccgttagattacgcggat
aacgttttagatgtagaacctttggaagccattcagatagaacttgattctgaggaagat
gaatctgtagcatcttggttttacgaacacaaaccactagtcggtactaagcacgtgaat
ggatccacctatagaaggtggaatttgactctaccacaaatggcgactttgtaccgtttg
gcaaatcaattattgacagacttagtggatcaaaactttttttatctttttgatccaaaa
tcattttttactgctaaagcattaaatatggctatacccggtggtccaaaatttgaaccg
ctagtgaaggattcaaacgcagccgacgaagattggaacgaatttaacgatataaataaa
attataatcagacaacctatcagaacagaatatcgcatcgcttttccttacctgtataac
aatatgccgcattttgttcatttatcttggtatcatgcaccaaatgtcgtttacataaaa
accgaagatcccgatttacctgcattttatttcgatcctctgataaatcctatctctcat
aggaattcattgaagactgtagaaccacaaatcgaagacgacgaagattttatacttccc
gaagaagtacaaccattccttcaagaaactcctttgtatactgataacacggcaaacggt
atagctttgctatgggcaccaaggccgtttaatactcgttccggcagaactagaagagct
attgacattcctttggtgaagtcttggtatagagagcattgcccaccaggacaacctgtt
aaagttcgtgttagttatcaaaagctgttaaagtacttcgttttgaatgctttgaagcac
agacctccgaaaccacaaaagaaacgttacttattccgatcgttcaaatcaacaaaattc
ttccaaaccaccacaatagattgggtcgaggctggtctgcaagtatgcagacaaggatac
aatatgttgaatttacttatccacaggaagaatttgaactatctccatttagattacaat
ttcaatttgaaaccggttaaaacgctcaccaccaaggagagaaagaaatctagattcggg
aatgcttttcacttgtgccgtgaaatcctccgtttaacaaaattgatcatcgactctcac
gtgcagtatcgtttaaataacgttgacgcgtttcaacttgcggatggattgcagtacatt
ttcgcgcatgtcggccaattgactggaatgtatcgatataagtataaattaatgagacaa
atcagaatgtgcaaagacttgaaacatttgatttattatcgtttcaatacgggtcctgtc
gggaaaggccctggttgtggattttgggctcccggttggagagtatggctatttttcatg
agaggaatcacaccgttgttagaaagatggttaggaaacttgttgtccaggcaattcgaa
ggtcgacactcaaagggagtcgcgaaaaccgtaacgaaacaacgagtggaatctcacttt
gaccttgaattgagagcgtcagtgatgcacgatatcgtggacatgatgccggagggaatc
aagcaaaataaagctcgaacgatacttcaacatcttagcgaagcatggagatgttggaaa
gccaatattccttggaaggtacccggcttgccaatccccatcgaaaatatgatcctgcgt
tacgtcaaaatgaaggcggattggtggacgaacaccgctcattacaatcgagaacgtatc
aggcgcggagcaaccgtggataaaactgtttgtaaaaagaatctagggcgtcttactcga
ctctatcttaaagccgaacaggagcgtcagcataattatttgaaggatggaccatacatt
tccccagaggaagcagtagctatatacaccacgactgtccattggttagagtccaggagg
tttgcccctataccatttccaccattatcttacaaacacgataccaaactgttgatatta
gctttggaacgtttgaaggaagcgtacagcgtcaagtcaagattgaatcaaagccaacgc
gaggaacttggtttgatagaacaagcgtacgataatccgcacgaagcattgtctagaatt
aaacgacaccttctgactcaaagagcatttaaagaggtggggatagaatttatggatctt
tacagtcacctgattcccgtttatgatgtcgaaccgcttgagaaaattacagatgcttat
ttggatcaatacctgtggtacgaagcggacaaacgaaggttgtttccgccatgggtaaaa
ccttcggacacagagccaccccctttgttagtttataaatggtgtcaaggtattaataat
ttgcaagatgtttgggacgtcagcgagggagagtgtaacgtgttattggaatcgaagttt
gagaaactgtatgaaaaaattgatctaacgttgctgaacaggcttctcagattgatcgtt
gatcataacatagccgattatatgactgcaaaaaataacgtcgttataaattacaaggac
atgaaccacacgaacagttacgggataatcagggggctacaattcgcatcgtttatagcg
caatattacggtctcgtgttagacttgctcgttcttgggttacaaagagctagcgaaatg
gccggcccccctcaaatgccgaacgatttcttgactttccaagacgtggcttccgaaacg
gcgcatcctatcagattgtattgcagatacgtagataggatacatttatttttgagattt
tctgccgacgaagctagagatttaattcaaagatatttgaccgagcatccggaccccaat
aatgaaaatatcgtcggttataataataaaaaatgttggcctcgcgatgctcgaatgcga
cttatgaagcacgatgtgaatttgggccgtgcagtattttgggatatcaaaaaccgtctg
ccccgttctacgactacgatacaatgggaaaatagttttgtcagcgtctacagcaaagat
aatcctaacttgctgttcaacatgagcgggttcgagtgcagaattctgccgaaatgcaga
accacgcacgaagaattcacgcacagggacggcgtgtggaatttgcaaaatgaaattaca
aaggaaagaacagctcagtgtttcttgagagtcgacgacgaaagtttacaacggttccac
aacagggttagacaaattctcatggcttccggttctacgacattcaccaagatcgttaac
aaatggaatacagctttgatcgggctgatgacatatttccgcgaagcagttgtaaacacg
caagaattattagatctattggtcaagtgtgaaaataaaatccaaacgcgtattaagatc
gggctaaattcgaaaatgccgtcacgattcccgccggtggtgttttacacgcccaaagaa
ctgggtggacttggaatgctttcgatggggcacgtactcatacctcagtcggacttgaga
tggtcgaaacaaaccgacgttggtatcacgcatttccgttctggtatgagtcacgacgag
gatcaactgattccaaatttatatcgatatattcagccgtgggaatcggaatttatcgat
tcgcaacgtgtatgggccgaatacgcgttgaagcgtcaagaagctaatgcacaaaatcgt
aggctcactttggaagatctcgaagacagttgggatcgtggtattcctagaataaacaca
ctattccaaaaagacagacacactctcgcctatgacaagggttggagaatacgcacagaa
tttaagcagtatcaggtcttgaaacaaaatccattctggtggacgcatcaacgtcacgat
ggtaaattatggaacttgaacaactatagaacagacatgattcaagctcttggtggtgta
gaaggcattctggagcatactcttttcaaagggacatactttccaacttgggaaggtctt
ttctgggagaaagcatctggattcgaagaatctatgaaatacaaaaagttaactaacgct
caaaggtcgggtttgaatcaaattccaaatcggcggtttacgctttggtggtctccaact
attaatagagcaaacgtatacgttggtttccaggtacaactggatttgacaggaatattt
atgcatggcaaaattccgaccctaaagatttctttgattcaaatcttccgtgcgcattta
tggcaaaaggtgcacgaatcgatcgtgatggatctttgccaagttttcgatcaagaattg
gacgcgctagaaattgaaactgtccaaaaggagacgatacatcctagaaaatcgtacaaa
atgaattcctcttgtgcggatattttgttgttctctgcttataagtggaacgtttctaga
ccgtccttgcttgcggattcgaaagatctcatggataacactacaacgcaaaaatattgg
atagacgtacaacttcgatggggagattacgattctcatgacatcgaaagatacgccaga
gctaaattcttggattacacaaccgacaatatgtccatctatccatcaccaactggatta
ctaattgcaattgatttggcatataatttacatagtgcatacggcaattggttcccagga
tgtaagcctctcatacagcaggcaatggcgaagataatgaaggcaaatccggctttatat
gtgttgcgagaacgcattagaaaagcgttgcaactttattcgtcggagcctacggaaccg
tacctatcttcacagaattacggcgaactattttcgaatcaaattatctggttcgtcgac
gataccaatgtttaccgtgttacaatccataaaacgttcgagggcaatttaaccacgaaa
cctataaatggagctatttttatttttaatcctcgaaccggccaactatttttaaaaatc
attcacacttctgtttgggctggtcaaaagcgtttgggtcagttggcgaaatggaaaacc
gccgaagaggtggctgcgcttattcgatctttaccagtcgaagagcaacctaaacaaatt
attgtaactaggaagggaatgttagatcctttggaagtacatttacttgattttcctaat
atcgttatcaagggatcggagcttcagttaccgtttcaagcttgcttgaaagttgagaaa
tttggcgacttaattttgaaagcaactgaaccccaaatggtgttgttcaatttgtatgac
gattggttgaaaaccatttcttcgtatacggcattctcgcgtttaattcttattcttcgc
gcgttacacgtcaatactgaaagaacaaaagttgtcttaaaacctgataagacaaccata
acggaacctcatcatatatggccatctttgacggatgatgaatggattaaagtcgaagta
cagctaaaagatcttatactagccgattacggtaaaaagaacaatgtaaatgtcgcgtcg
ttaactcaatcggagatccgagatatcattctgggtatggaaattagtgcaccgtccgct
caacgtcaacaaatcgctgaaatagaaaagcaaacgaaggaacagtcacagcttacagcg
acgaccaccaggacggttaacaaacacggcgatgaaattattactgcaacaacttccaat
tatgaaacgcaaacgttcagttctaaaaccgagtggcgggtgagagcgatttcagcaaca
aatttgcatctcagaacaaaccatatttacgtgtcgtccgatgacataaaagagaccggt
tatacttacatattgccaaagaacgttctcaagaaattcgttaccatttccgacttacgt
gcccagattgcgggatatttatatggtattagcccaccggacaatcctcaagttaaggaa
atcagatgcatagttatggctccgcaatggggaacgcatcaaactgttcatttgcctaac
acacttccgaatcatcaatatctcaaagaaatggagcctcttggttggatacatactcaa
cctaatgaattgccgcaattatcaccacaggacatatctacacacgcgcgggtaatggcg
gagaatcctatctgggatggagaaaagactattgtcattacttgcagtttcacgccagga
tcttgttcactcacagcctataagttgacaccaagtggtttcgaatgggggaaacaaaat
accgacaaaggaaacaaccctaaaggttatttaccgagtcattacgaaaaagtgcaaatg
ctgttgtccgatcgttttctcgggttctttatggtcccaagtcaaggatcttggaattat
aattttatgggcgtaagacacgatccgaatatgaaatatgaacttcagttggcaaacccg
aaagaattttatcacgagattcatcgacctgcccacttcttaaacttttcgagtttggag
gatggcgacggtgtcggagctgaccgagaagatgtatatgcttga
DBGET
integrated database retrieval system
