Colletes gigas: 122395594
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Entry
122395594 CDS
T07492
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03020
RNA polymerase
cgig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122395594
09124 Replication and repair
03420 Nucleotide excision repair
122395594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122395594
03400 DNA repair and recombination proteins [BR:
cgig03400
]
122395594
Enzymes [BR:
cgig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122395594
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122395594
DNA repair and recombination proteins [BR:
cgig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122395594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
122395594
NCBI-ProteinID:
XP_043249222
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQSRKRLTFVYDLCKSKNICEGGDEMDINKENPEQQPPDRKPGHGGCGRYQ
PNLRRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEEIVREMMGSGEVISELEREWEQLNKDRGVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTVEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgactctaaagcgcctctgcgaacggtgaaaagggtccaatttggcata
ctttctcccgatgagatacgtcggatgtcagtcacggatggcggcattcgctttccagaa
actatggagggtggtcgcccgaagcttggtggacttatggacccaaggcagggtgtcatc
gatagaaattcaagatgtcagacatgcgccggtaacatgacagaatgtccagggcatttt
ggtcacatagatttggctaaaccagtttttcatgttggttttataacaaaatcaatcaaa
attctgagatgcgtatgtttttattgctcaaagctgcttgttagtccacacaatccaaaa
ataaaagaaattgtaatgaaaactaaaggacagtcgcgtaaacgtctcacgttcgtttac
gatttatgtaaaagtaaaaatatttgcgagggtggagacgaaatggatattaacaaagag
aatccagagcaacaacctccggatagaaaaccggggcatggcggttgtggcaggtatcaa
cctaatcttcgaagatcgggtctggatgttaccgcagaatggaaacacgtgaacgaagat
tcgcaagagaaaaaaatagcgcttaccgctgaaagagcatgggaaattttaaaacatatt
acggacgaggaatcgtttattcttggtatggacccaaagtttgctcgaccggattggatg
gttgtaacggtgttacctgttccacctttatcggttagaccggcagtcattatgtacggt
tccgcgaaaaatcaagacgatttgacacataaactcgcggatattataaaatcgaacaac
gaattgatcagaaacgagcaggctggagcggcagcacacgttatatccgagaacataaag
atgttgcaatttcatgtagcgacgttggtcgataacgatatgccgggaatgccaagagca
atgcaaaagtcaggtaaaccgttgaaggctataaaagcaagactgaagggaaaagaaggc
agaataagaggaaatttgatgggtaaacgtgttgatttttctgctcgtactgtcatcacg
ccagacccgaatttgcggatcgatcaagtaggtgtacctagaagtattgctcagaattta
acattccctgaaattgtgacgccttttaatatcgataaaatgcaagagctcgtcagacga
gggaattcacagtacccgggtgccaagtacatcgtcagggataatggtgaaaggattgat
ttaagatttcacccgaaaccatccgatttgcatttacaatgtggatatagagtagagcgt
cacatccgtgatggcgatttagtgattttcaatcgtcagccgactctgcacaaaatgagt
atgatgggacacagggtgaaagttctcccttggagtacattccgtatgaatcttagttgt
acgtcgccttataacgccgatttcgacggcgacgaaatgaatttgcacgttccgcaatcg
atggaaacgcgcgcagaagtggaaaacattcacgtaacgccgcgtcagattatcacgccg
caagccaacaaacccgttatgggtattgtacaggacacgcttaccgctgtgagaaaaatg
acgaaaagggacgtgtttatagaaaaggaacaaatgatgaacattctgatgttcttgccc
agctgggatggtaaaatgcctcaaccgtgtatattgaaaccaaagccattatggaccggt
aaacaaattttctcactgatcataccgggtaatgtgaacatgatcagaacccatagcacg
catccggacgaggaagacgatggtccgtacaagtggatatcacctggtgataccaaagta
atggtagaacacggagaactcgtgatgggtatactttgcaagaagactttgggtacatcg
gcaggttctttgcttcacatttgtatgttggagttaggtcacgaggtttgcggacggttt
tacgggaatattcagactgtgattaataactggttgctgctagaaggtcattccatcggt
atcggcgacactatcgccgatccgcagacttatttagaaattcagaaagcgatcaaaaaa
gccaaagaggatgtaatagaggtgatacagaaagctcacaatatggagctggaacctacg
cccggtaacactttgaggcagactttcgagaatcaggtgaacagaatcttgaacgacgct
cgtgacaagactggtggctccgcgaagaaatctttgaccgaatacaacaatctgaaagct
atggtggtgtcaggatcgaagggatccaatattaacatttctcaggttattgcttgcgtg
ggtcagcaaaacgttgaaggtaaacgtattccgttcgggttccgtaaaagaacattaccg
catttcatcaaggacgattacggtcccgagtccagaggattcgtcgagaattcgtatctg
gccggtctgactccatcagagttttatttccacgctatgggaggtcgtgagggtcttatc
gatactgctgtaaaaactgcagagactggatacattcagcgtcgtttgataaaggctatg
gagtctgtaatggtgcattatgacggaacggttaggaattccgtgggacagctgattcag
ttgcgttacggcgaggacggtttatgcggcgaaactgtagagttccaaaacttacccact
atcaagctgagcaacaaagcgttcgagaagaagttcaagttcgatccgacgaacgaacgc
taccttcgtcgcatttttaacgaagagattgtcagagaaatgatgggatccggcgaagtg
atctccgaactggaaagggaatgggaacaattgaacaaggatcgtggagtgctcagagag
atattcccaagcggagaatcgaaagttgtattgccgtgcaatctgcaacggatgatttgg
aacgtgcagaagatattccacataaataaaagggcacctaccgatcttagtccaatgaga
gttatacaaggtgtgaaggatctcctagagaaatgtatcatcgtggctggtgacgacaga
ctcagtaaacaggcgaacgaaaacgccactctgttattccaatgcttagttagatctact
ttatgtacaaagtgtgtttccgaagagtttagattgtccagcgaagctttcgaatggctt
atcggggaaattgaaacaagatttcagcaagcacaagtatcgcctggcgagatggtaggc
gctttggctgctcagtcactcggtgaacctgccactcagatgacattgaacactttccac
tttgccggtgtatcgtcgaagaacgtaactctgggtgtacccaggctgaaggaaattata
aacatcagtaagaaaccaaaggctccttcgttgacggtgttcctgacaggagctgcggcg
agggacgcagaaaaggcaaagaatgtgctttgtcggctggagcacacgacgctgagaaag
gtcacggcaaataccgcaatttactacgatccagatccgcagaataccgtaattgccgaa
gatcaagaattcgttaatgtttactacgagatgcccgatttcgatccgaccaaaatatcg
ccgtggttgctccgtatcgagttagaccggaaacgaatgaccgacaaaaagttaactatg
gaacaaatcgcggaaaagatcaatgccggttttggggacgatttgaattgcattttcaac
gacgataacgccgaaaaattagtgttacgaattaggataatgaacagcgacgacaacaaa
ttccaagacaccgtagaagagactgtagacaaaatggaagacgatatgtttctgcgatgt
atcgaggcgaatatgctgagcgatatgacgttacaaggcatcgaagccattggaaaagtg
tacatgcatttaccacaaactgattctaagaaacgcatcgttatcacggaaaccggtgaa
tttaaagcgatagcggaatggttactagaaactgatggaacaagtttaatgaaagtattg
agcgaaagagacgtggaccctgttaggacgttcagtaacgacatttgtgaaatattccaa
gtgttgggtatagaggctgtgagaaaatcagtagagaaagaaatgaacgctgtattgcaa
ttctatggtctttacgtaaactaccgtcatcttgctctgctttgtgacgttatgaccgcc
aaaggacacttgatggctataactcgtcacggaattaacagacaggatactggcgctctt
atgagatgttctttcgaagaaacggtggacgttttattggacgcagcatctcacgcagaa
gttgatcctatgaggggagtgtctgaaaatattattatggggcaacttccacgcatagga
acagggtgctttgatttattactggacgccgagaaatgcaaagctggtatcgaaataccg
atggcagtaggagctggtgtaatgggtaccgctggaatgttcttcggtagcgttgccaca
ccaagtatgagtcctcaaatgacaccttggatgggtgctactcctggctatggcgcttca
agcatgtcacctgcactgggtagcggtatgacaccaggaggtgcatgtttctcgccatcg
ggagcatcggatgcttctggactttcacccgcgtattctgcatattcacctcaaccggga
agtccaggaagtccaggacccagcatgagtccgtaccccatgtcgccagcgggcggtgct
tcgcccagctattcgcctacgtcgcccgcctacttaccaacatcgccgagtatgacacca
tcgagtcccaactactcgcctacgagtccaacgtactcgcccaccagtccaaactattcg
ccaacgagtccttcgtattcgccaacatcgcccagctactcgccaacctcgccgagctat
tcaccaacgagtccttcgtattcaccgacgtcgccaagttactcgccgacgagtcccagt
tactcgccaacctcgcccagttactcgccaacctcgcccagctattcaccaacgagtcct
tcgtattcgccaacgtcgcccagctattcgccaacctcgcccagttactcgccaacctcg
cctagctattcgccaacgagtccttcgtattcaccaacatcaccaagctactcaccgacg
agtcccagttattcgccaacgagcccaagctattctccgagctcgccgaattacacacca
gcctctccatcgtactcccccacgagtcccagttattcgcctagttcgccacaatattcg
cccgctagtcccagttactcgccgagcagcccaaaatattctccgacgagtccaagctac
tcgcccacgtcgccatccttcgctggaacctcgccacagtacacaccagccagtccaacg
tattcgcccacgagcccgacctactcgccaacgagtccatcttattcaccgagttcaccg
caacacacagcatcggggagcacgagatactcgcccagcagtccgaattactcacccact
agtccgacgtattcaccgacgagtcctcaatactcaccatcgagcaccaagtactcaccc
acgagtccaacgtacacaccgaccagtccaagttattcaccaacgagtccaacgtattct
ccgcctgtgcctggatactcgccgacgagtcctacttactcgccggcgtcgccagcctac
gaaacagacgattaa
DBGET
integrated database retrieval system
