Colletes gigas: 122395720
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Entry
122395720 CDS
T07492
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122395720
03016 Transfer RNA biogenesis [BR:
cgig03016
]
122395720
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122395720
Spliceosome [BR:
cgig03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122395720
Transfer RNA biogenesis [BR:
cgig03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122395720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Cas3-like_C_2
AroM
Motif
Other DBs
NCBI-GeneID:
122395720
NCBI-ProteinID:
XP_043249474
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MTAFEEMGVLPEIGKAVDEMEWMLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPV
LQIVWETLKDFESGKTKSSTGHVQASTHWLLSLFDRGKALAVTPDGLRCQSREPKEWHGC
RANRGISGNEKFFYEATVTDEGLCRVGWSMSQASLDLGTDKFGFGFGGTGKKSNAKQFDS
YGEAFGMHNVIGCYLDLSRGEISFSKDGVHLGVAFTLNAQQKSQTFYPAVVLKNAEMSFN
FGAQPFKHPPPNDYKGLASVPKELVKENPINSSQTQSKEDGKPKCNAPQAIIIEPSRELA
EQTFNQIQKFKKDLKDPVIKELLVIGGVSVKEQISVLNSGVDIVVGTPGRLEDLIQGGYL
ALTHCRFFILDEADGLLKQGYTELIDRLHRQIPKITSDGKRLQMIVCSATLHAFEVKKMA
ERLMHFPTWVDLKGEDAVPETVHHVVVIVDPQKDTTWTNMRKYIQTDGVHSRDDIRPGSN
NPETLSEAVKILKGEYCVRAIKEHNMDRALIFCRTKMDCDNLERYLKQTGGNQFSCVCLH
GDRKPPERKSNLEKFKKQEVKFLICTDVAARGLDISGLPFMINITLPDEKSNYVHRIGRV
GRAERMGLAISLVSKVPEKVWYHGEWCPMRGRNCQNTNLTNQGGCCVWYNEPNYLAEIED
HLNVTIQQVGTDIKVPLNDFDGKVTYGQKKRSMGSDYQNHVQQMAPYVSQLSSLESKTQL
MYLKRHMAAGAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacagcattcgaggaaatgggtgttttgcccgaaatcggaaaggcggtcgatgaaatg
gaatggatgttaccaacagatgtgcaagccgaagccattcctttaattttaggtggtggt
gatgtattaatggctgctgaaactggcagtggaaagaccggtgcattttgtttaccggtt
ttgcaaattgtatgggaaaccttaaaggactttgaatctggcaaaactaagagttcaact
ggacatgttcaagcttctactcattggctgctcagtttatttgatagaggtaaagctcta
gcagtaactccagatggcttgagatgccaaagtagagagcctaaagagtggcatggttgt
agagcaaatagaggcatcagtggcaatgaaaagtttttctatgaagctactgtaaccgat
gaaggattatgccgtgttggctggtctatgtctcaagcctcactggatttaggaacggac
aaatttggctttggttttggtggaactggtaaaaaatcaaatgcaaaacaatttgatagt
tatggagaggcatttgggatgcacaatgtaattggatgttacttggatttatcaaggggt
gaaatcagcttttcaaaggatggtgtacacttgggtgtggcattcactctaaacgcgcaa
caaaagtctcaaacattttatccagctgttgtattgaaaaacgcggaaatgtcttttaat
ttcggagcacagccatttaaacatccgcctccaaacgattacaaaggtctcgcttcggtt
cctaaagaattggtaaaagaaaatccaataaatagcagtcagactcaaagtaaagaagat
ggtaaaccaaaatgcaatgctcctcaagctataatcatagaaccctctcgagagcttgct
gaacaaacctttaatcaaatccaaaaatttaaaaaagatttgaaagatccagtcattaag
gaattattagttattggcggtgtgagcgtgaaagaacaaatttctgtactaaattctggc
gtggatattgtggttggaacaccaggacgtttagaggatttaatacaaggcggatatttg
gcattaacgcattgcagatttttcattttggatgaagcagatggtctattgaaacaaggt
tacacggaattaattgatcgtttgcacagacaaatacctaaaattacatcagacgggaaa
cgattacagatgatagtatgttcggccacgttgcatgcgtttgaagtgaaaaaaatggct
gaacggttgatgcactttccaacatgggtagatttgaaaggggaggatgcagtacctgaa
acagtacatcatgttgttgtgatagtggatccacagaaagatactacttggactaatatg
agaaaatatatacaaaccgatggcgtacacagcagagacgatataagacctggaagcaac
aatcccgagacactttcggaagctgtgaagatattaaagggtgaatactgtgttcgtgct
atcaaagagcacaatatggacagagctcttattttctgcagaaccaaaatggactgcgat
aatttggaacggtatttgaaacagaccggtggtaatcaattctcgtgcgtgtgtttgcac
ggtgatcgaaagcccccggaacgtaaatcgaacttggaaaaattcaagaagcaagaagtg
aagttcttaatttgcaccgacgttgcagccagaggattggatatctcaggattacctttc
atgatcaatataactctacccgatgaaaaatcgaactacgtgcatcgcattggtagagtc
ggtagggccgaaagaatgggtctggctatttctttggtcagcaaggtgccagaaaaagta
tggtatcacggtgaatggtgtcctatgcgcgggaggaattgtcagaatactaatcttact
aatcagggtggttgctgtgtctggtacaatgaaccaaactatttagccgagatcgaggat
catctgaacgtcacgattcagcaagttgggacagacataaaagttccactaaatgatttc
gatgggaaagtcacttatggacaaaagaaaaggagcatgggctccgattatcagaatcat
gttcaacaaatggcaccctacgtatcccaattatcttcgttagaatcgaaaacgcaactc
atgtacttgaaaagacatatggctgctggagcaaactaa
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