Colletes gigas: 122396054
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Entry
122396054 CDS
T07492
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
cgig
Colletes gigas
Pathway
cgig03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122396054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122396054
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122396054
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122396054
RNA polymerase I system
122396054
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122396054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW6_SPT5
KOW
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
CTD
GPKOW_C
SH3_KIN17_C
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
122396054
NCBI-ProteinID:
XP_043250092
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MSDSEASNLSDNESDRGGGGSESDQEENRSVKSAAGSDAGSVGERSRSVSRSRSPSRSRS
RSASRSRSRSRSVSGSEDGRGDEAEEARSGDEELVEPEEEPEGEDLDGSSEYDEEEEEED
DDRPRKKKKKDKYGGFIIDEAEVDDEVEDDDEWEEGAQEIGIVGNEVDELGPTAREIEGR
RRGTNLWDSQKEDEIEEYLRKKYADESVAARHFGDGGEEMSDEITQQTLLPGVKDPNLWM
VKCRIGEEKATVLLLMRKFITYQFSNEPLQIKSVVAPEGVKGYIYIEAYKQPHVKAAIEN
VGNLRMGIWKQQMVPIKEMTDVLRVVKEQTGLKAKQWVRLKRGIYKDDIAQVDYVDLAQN
QVHLKLLPRIDYTRPRGALRTAQSESEALKRKKKRRPPAKPFDPEAIRAIGGEVTSDGDF
LIFEGNRYSRKGFLYKNFTTSAIIAEGVKPTLSELERFEEAPEGVEIDLSGGPTGTSSNR
EDAAVTHSFSTGDNVEVCEGELINLQGKIVSIDGNMIMVMPKHEELKEALEFQASELRKY
FTMGDHVKVVAGRYESDTGLIVRVEQNRVVLFSDLSMHELEVLPRDLQLCSDMATGVDSL
GQFQWGDLVQLDAQTVGVIVRLERENFHVLSMHGKVIEARPQGLTKRRENRNAVALDSQQ
NTIQKKDIVKVVDGPHAGRGGEIKHLYRSFAFLHSRMFVDNGGIFVCKTRHLQLSGGNKA
NITAMSPVAGFMSPRIASPMHPSGGGFGRGGGGRGRGRGGGARRDRELIGTTIKITGGPY
KGNVGIVKDATETTARVELHSTCQTISVDRSHIANVGVPTKDGGFSSYNRTPAYGMGGQT
PMYARDGSKTPMHGSQTPMYENGSRTPHYGSMTPSHDGSRTPGQSGAWDPAVTNTPARTN
DFDGYNMEEGGSPGYAPGYPSTGGPFTPQTPGTMYGSEQSFSSYQPSPSPAGSASASPSP
AGYVATPSPSGTGYTTSPHGAFATPSPMGYSPMTPGVAGSPYNPQTPGAGLDASVGSAIV
GGTEWHTTDIEVRIRHSHQDPALAGQQGVIRGISGGMCAVFLPVEDRVVNLVCEELEPVV
PSQGDRVKVIIGEDREAVGTLLSIDNQEGVVKMNKDEVKMLHLRFLCKMKAPNT
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcagaggcgagcaatctgtccgacaacgaaagcgaccgcggtggcggaggt
agcgaaagcgatcaagaagaaaaccgctccgtaaaatctgcagctggcagcgatgctggc
agcgtcggggaaagatcacgcagtgtttctcggagcagaagcccgtccagatcgcgatcc
aggagtgcgtcgagatcgcgatcacgatcacgatcggtgtctggttctgaggatggtaga
ggagacgaggcggaagaagccaggtcaggggatgaggagctggtggagcctgaagaagaa
ccagagggcgaagacttggatggaagcagcgaatatgatgaggaagaggaggaagaagat
gacgacaggcccaggaagaagaagaaaaaagacaagtatggtggtttcatcatagatgaa
gctgaagtagacgatgaagttgaggatgacgacgaatgggaagagggtgctcaagagatt
ggtatcgtggggaacgaagtagatgaattgggacccactgcaagagaaattgaaggaaga
cgcagaggcaccaatctttgggattcgcaaaaagaggatgaaatagaagagtatttgaga
aaaaagtatgcagacgagtctgtggccgctcgtcattttggggatggtggggaggaaatg
agcgacgaaattactcagcaaacattgttgccaggtgttaaggatccaaatctttggatg
gtgaaatgccgtattggggaggagaaagccactgtacttttgttgatgcggaaattcata
acttatcaattttcaaacgaacctctgcagataaagagcgtcgttgctcctgagggtgta
aagggttacatttacatagaagcgtacaaacagccgcacgtgaaggctgccatcgaaaac
gtaggaaacttgagaatgggtatttggaagcaacaaatggtaccgatcaaggaaatgacc
gatgtgttacgcgtggttaaagagcagacaggcttgaaggcgaagcagtgggttagacta
aagagaggcatttacaaagatgacatagctcaggtcgattacgttgacttggcgcagaat
caggttcatttgaaactgctgcctagaatcgattacaccagaccccgcggagctttgaga
acagcgcaaagtgaatccgaagccctgaaacgcaaaaagaaaagaagaccgccggcgaaa
ccgttcgaccccgaagcaattcgcgctattggcggagaagtgaccagcgacggtgatttc
ttgattttcgagggaaatcgatacagtagaaaaggattcctgtataaaaatttcacgacg
agcgcgattatcgcggagggcgtgaaaccgacgctttccgaattagaaagattcgaagag
gccccggaaggcgttgaaatagatttaagcggaggtccaacggggacttccagtaacagg
gaagacgcggcggtgactcactcgttcagtaccggggacaacgtcgaggtttgcgagggt
gaattgataaacttgcaagggaagatcgtttcgatagatggaaacatgataatggttatg
ccaaaacacgaagaactcaaggaggcgttggaattccaagcgtcagagttgcggaagtac
ttcacgatgggcgatcacgttaaggtcgttgcaggacgatacgaaagcgataccggtctg
atagtccgagtagagcagaacagagtggtcttgttttctgatctgtcgatgcacgagctc
gaagtcctcccgagggacttgcagctctgttcggatatggcaaccggcgtggatagttta
ggtcaatttcagtggggcgatttggttcagttggacgcgcaaacggtcggcgtgatcgtt
cgtctcgaacgcgagaatttccacgtgctttccatgcacgggaaggtgatagaggctaga
ccccaaggtctaacgaaacgacgcgagaacagaaatgcagtggcgttagattctcaacag
aacaccatacagaagaaggacatcgttaaagtcgtggacgggccacatgctggaaggggt
ggtgaaataaaacatctgtacagaagcttcgcgtttctgcactcgcgaatgttcgtggac
aacggtggtatattcgtctgcaaaacgaggcacttgcaactgtctggtggaaacaaggcc
aacataaccgccatgtcgccggtggcaggattcatgtcgccaaggatcgcctcgccgatg
catcctagcggaggcggttttggaaggggtggaggtggaagaggcaggggccgcggagga
ggagctcgccgcgacagagaactgataggtaccaccataaagatcactggtggaccttac
aaaggaaacgttggtatcgtgaaggacgccacggagacgactgctcgcgtagaactgcac
tccacgtgccaaaccatctccgtggacaggtcccacatcgcaaacgtgggcgtaccgaca
aaggatggcggtttcagcagttacaacaggacaccagcgtacggcatgggtgggcaaaca
ccgatgtatgccagagacggttcaaagacgcctatgcatggttcccagacacccatgtac
gaaaatggttcccgtacacctcattatggctcgatgacgccatcccacgatgggtcacgt
actccaggacagtcaggtgcctgggatccagcggtcactaatacccccgcaaggacgaac
gatttcgacggctacaacatggaggaaggcggatctcccggttacgcaccaggttacccc
tcaactggtggaccattcacgccacaaacacctggcacgatgtacggttcggagcagagt
ttcagctcgtatcaaccgagtcctagcccggctggaagtgcttccgcgagccccagccct
gcgggttacgttgctaccccctcgccaagcggcactgggtacactaccagtcctcacgga
gcattcgctacgccttcgccgatgggttatagtcctatgacgcctggcgtggctggtagt
ccttacaatccacaaacaccaggtgctggtctagacgccagcgtcgggtcagcgatagta
ggagggaccgagtggcacaccacagacatcgaggttcgaattcgtcactcccaccaggat
cctgcacttgccgggcaacagggcgtcattcgaggaatatccggtggcatgtgcgcagtc
ttcctaccggtcgaggatagggtcgtaaatttggtctgcgaggaactggaaccggtggtt
ccgtcgcagggcgatcgggttaaagtaattatcggcgaggacagggaagccgtcggtaca
ttactttccatagataatcaagaaggtgtcgtgaaaatgaacaaggacgaggtgaagatg
ttgcacttgcggttcttgtgtaaaatgaaagcgccaaatacgtaa
DBGET
integrated database retrieval system
