Colletes gigas: 122396093
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Entry
122396093 CDS
T07492
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122396093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122396093
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122396093
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122396093
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Baculo_PEP_C
V-SNARE
Phage_Mu_Gam
Spectrin_Anc-1
Motif
Other DBs
NCBI-GeneID:
122396093
NCBI-ProteinID:
XP_043250149
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKTWLASGEIKDKTTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKE
REEVSNWLANSIDALNLQLDTFESEIESLLAGKKKRLDKDKQDRMDELKGKLDKHRYHIR
KLETLLRMLDNMSVEVNTIKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVELSGVG
IPSSATTDSNNSNETGGTPTSTNSGTSPIPSPPLSSTMHNHSSDSSTDNDKKTKPVKPTA
VRPLLNSQASIPTTGSTATIKSNLLSSSTPSKTIPMTPSHNSPSSTSNHIATTNAGNFAT
VAASHSNSQAIHSTSSKTSSHSSENGLLSSSSTSSVTSNVPQTISQQHNNPAPIPTTHVL
HNQQNQNHNSETEMTTPIPPSSSPQSSVSSRSSPLPANSCSPAPSTANGLIPKLPDGMSS
LKSIAQQVIVRAGLEIPPSESNRNIFDSTKANNNNNNATLEAQIPPLLGVAPLGPVPLQK
EHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNLCPTPPYYQQVQLPHSDTVEFFQRLSTE
TLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIYFDY
EKWGQRKKEGFTFEYKYLEDRDLN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgacgagaaagttgcaaggtgaaatagatcggtgccttaaaaaagtaacagaa
ggtgtagagacatttgaggacatttggcagaaggttcataatgctacgaacagcaatcag
aaggagaaatatgaagcagaccttaagaaagaaatcaaaaaactccagaggttacgtgat
cagatcaaaacctggcttgcgtcaggcgagattaaggataaaactacgcttcttgagtat
aggaagttaatagaaactcaaatggaaaggtttaaagttgtagagagagaaacaaaaacg
aaagcatattcgaaggaaggtttaggagcagctcaaaaacttgatccagctcaaaaagaa
agagaagaagttagcaattggcttgcaaattccatagatgctttaaatcttcagctggat
acgttcgaatccgagatagaatcattgctcgctggaaagaaaaaaaggttagataaagat
aagcaggatagaatggatgaattaaaaggaaagcttgataaacaccgttaccatatccgt
aaattggaaacattgttacgcatgttggacaatatgtctgttgaagttaatactattaag
aggataaaagatgacgtagagtattatattgaatcctcacaggaacctgattttgaggag
aacgaatatatttatgatgatattattggtctcgacgaagtagagctgtctggagttggt
attccttcatcagcaactacagacagtaacaatagcaatgagactggaggtacaccaacc
tcgactaattctggtacttcgcccataccatcacctccattaagttccacaatgcacaac
cattcgagcgatagttctacggataatgacaagaaaacaaagcctgtgaaacctacagca
gtcaggccactattaaattcacaggcgagcattccaaccacgggaagcactgccactata
aagtcgaatttattgtcgagcagcactccaagcaagaccattcccatgacacctagccat
aactcgcctagttctacaagtaatcatattgcaacaactaatgcaggcaactttgccaca
gtagctgcttcgcatagtaattcacaagccatccattctacctctagtaaaacatcctct
cacagcagcgaaaatggtttattgtcgtcttcgtccacgtccagcgttacctcgaatgtg
ccacaaacgatctcacagcagcacaataatcctgcgcccataccgacgacacacgtgttg
cacaatcaacagaatcagaatcacaacagcgaaaccgaaatgacgacgccgataccacca
tcttcttcgccacaatcgtcagtcagcagtaggtcttcgcctctgcctgcaaattcctgc
tcgccagcaccatccactgccaatggtctcatccctaagcttcctgatggcatgtcctct
ttgaaatccatagcccaacaagtaattgtccgagcaggtttggaaataccgccgtccgag
tcgaatagaaacatctttgatagtactaaagcgaacaataacaacaataacgccacattg
gaagcacaaattcctcctttgctcggcgttgcgccgctcgggccggtacctcttcaaaaa
gaacatcagctacagttccagatgatggaggccgcttactatcacatgcctcatccgtct
gattccgagcgtttgcgatcatatttaccaagaaatctgtgtccaacgcctccttactat
caacaggtccaacttccccattctgacactgtcgagttctttcaacgtctttcaacggaa
acattatttttcatattttattacatggaaggttctaagggccagtacctggctgcaaaa
gctctaaaaaaacaaagttggaggtttcacactaagtatatgatgtggtttcaaagacac
gaggaaccgaaagtaatcaacgaagagtatgaacagggaacctacatttattttgattat
gaaaagtgggggcaaaggaaaaaagaaggctttacatttgagtacaagtacttagaggac
agggatctgaattaa
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