Colletes gigas: 122396190
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Entry
122396190 CDS
T07492
Name
(RefSeq) vacuolar protein sorting-associated protein 13 isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgig04131
]
122396190
Membrane trafficking [BR:
cgig04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
122396190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
122396190
NCBI-ProteinID:
XP_043250303
LinkDB
All DBs
Position
Unknown
AA seq
3286 aa
AA seq
DB search
MVFESIVTELLNKVLGEYIQNLDNSQLKLSLWGGDVVLNNLLIKETALDVLDLPVRLEFG
RLGKLILKIPYKDMWNGQIDAIVEELFLLIVPTSQIVYDAEKEAKVQLDTKRAELARVEK
TKQLADTKLQEKLDDSMIEKLVARMIKNIHVEIKRIHVRYEDHVSFKDHPFSVGFTLNKF
VLESCTDSWNTNGNLKDMYAIPQIYKLCTLDGLAAYLNTTAEQFSSSEQSDYSGLFCSGI
ATIDYTPPGYQYLLGPINVNAKLKLNPKPETDGSNYTIPKVWLDLEMQKLRIGLAKKQYQ
TLVQLGEGLDQAQKAAPYRKYRPNLTSYRGHYKEWWRFAYTCILEETVRRSRRNWNWNHM
KQHRDLCRQYADVYQTKLTSKKVAQEIEDCLTDCERKLDIFNLVIIRQQIEMEVERLAEK
EKNLKAKRGWFGFLWSGSQAEETEDLNSAAAIMRKFEQAMTPQEKEKLYRAIDYQENTAP
THYPETYEMIDTRFLLHELQIIILDMAKDHPCILDLQLHDVRACFKSRPSANAIFVTASI
NEMKLLGTKQDEQVPSLFNSHEHSADAVLLSISYEKNPLDKLCGDRVIVKSTSVDIIYDA
QTVIELVNLFKVENSSTLNQLQAAAAEQLEGLKEMSALGLEHAIQKHSILDMQVDMQASQ
LIVPHDGFYNDTKSLLVVNLGSLKMHSLENPKDDKTNVTVKQLISMGKSEEDVLLHLREH
SYDKFVLKIVDFQVLVSLPGEEWRTILSKVDDSMTLLQPTTLEIQFHKCLITDDPLLPKL
RLIGQLPSVVINITDKRLLQALSIAQSLPFPQEEEPTELRKFSLSKSVSQLSLLKELTTI
SEKKKEAVVSVKQTTDLEMKFEMKEFSLLISSQKNGLITPFMNLEVLQLEAEMLQRTYDQ
EILLRLGGIQVKQHYKETDIFMVNTPMSSGKDEYLITVQYINVNKRSPEFTTKHGSVIKL
LKLEFTTLDVLLHQEALISLLQFATYMQDQMNAITSSRIEKERRMRPRHLTSIQEETSAF
FKEQIQKQKFRSTSRRRKAVIEDIDLKIQAKVGTICMKLVSECREISAFYIAGITAGFIM
KTSYSQANVNLSSISIIDLNAASAYRDIVSVAEYTESLQIQATMYNIEPTNVDKNNMSIT
VLMGCYRIIFLNMFVTSIMSFLNNFQAAQQAIKDASAAAAEAARTNIKDVQESAARIGLA
VKIKAPVIYVPMHSKNNHCLTLDMGNLTICNVFKKLEVANENGDSPIVDEMKIELQNLKL
SRVKLNMEKFEIENEILLLEPVSFTLLIKRNLSTAWFTSIPDIDMSGRLNKINVLISKED
YVTALKVLEENLGEVAEDTKFVQNVSQNEKKLEVEVLQHHRSDEFGEPTVSSMEDREFQE
QVNIHTSIKFEFVMDSLVISLFTGGSKMLRSQSSLLHLPENGLAKFCLTHFALKGRIFAD
GLMATSILLMNCTLDDTRQSRQGSLIRIMERTTEVPSIDDLENESNSVRSMLDMTIRQSS
NDMFVDVRVFSFSIIVSLDYLMKIKDFFASEEAPSNKAMPQNISKNYNESVVKKKQTQAV
PNNKMFTINLHVEKPDIILLEDMDDINSNCIILNTELLLKVRLMGEHQVITGSIKDLTIL
AGIYNPQKRSDWIYQVLRPCSISVAGSTLEEKGLHVDVCCTDIHVSVSPGVIEILNKVVH
TATKTEVKDEEVVISEPNHNGLWIITPFEENDFWFLHTEVGMEAMENLSFTDHDVTLYKP
ELAIISAPTILFTLEAGVGNKTLPMLLLHIGFQSNVNDWSSKSMSVEGTMSLIMAYYNSR
LALWEPLIEPIEATKNKKRISTPWELETKIQFNDVAVNSRGASVMSPTSDSEPEEWHQIP
KMSIDIISSENLEITVSKTCLDVLKQLGNAFSSAMEASETGTAKSVAPYVLKNETGLAMV
LDLKRSHFKVFNDGSTTVNDSVVSYMEVILESGASIELAPKTTKTEIPLLDQVKTESIQE
REDDKFIITFKEIGGTLAIPVLRADKRFFSLRYRKESSEEWGIVSDVVVDEGSTIVTLRS
ILQVHNHFSEPISVYYMTKRGNEVECVGTVAPDSKLNLPLDAVYTPTNIYWLFFSVDRYM
VSIEPFVWKDLQKTVSMSKLLKCESRTKQDVVEPFYIKVVGEIEQVYFENTSRHTMASTI
YNVHLYPSVYLKNFLPIDIIVCLPGAVQEKLLEAGTSYQIPTIDPGKSYIIIKLPNYLEK
DWSCRGELIANPPEFSVWSFESFDSVQKVVLDLGMHTSYEHGSIVMALYCPFWMLNKTGL
MLSYKKSSKGGKEHSSPIKSLGCVRKPCQQRGEYRKEKPCSVSGDDFLNVLYHPENFKGP
ILFSFRSKVFFGKKKAMIRIEDGEWSEKFPIDVAGSEGVVVCRYNGLTYQIGVHNQLTYN
SLTKQITFTPYYVLINNSNFLIECQEGDRPADPMMKIPPGECTALWPRSENEQKTLRAKV
ASEPEKTAPFVYTDSHTTLLKLNNKYGGINVDVQISEGGVYISLSAYTYGNAPALIINHT
PHTIHFWEKGSLNVRSVQSFNRMFYTWENPAGPRKLMWEDNNKKEIEHTLRKDFLGAFHL
PDLDEEVFHVSFLDGTQRILLFTTSMKIAEDCQLVGDLETIEQEVTISIHGVGLSLVNNV
TRIELLYMCIASSDIIWETSKSSAHRWRGISTRDVILIEEGYQKYIRELQIGKDPPYRVM
LEPKLEVDYLNMEMLRPHHRTLRRTFQTGLWLQYRASLHQVQLHAKINRLQIDNQLSDCV
FPVILAPVPPPKSVTQSTVMKPFAELGMVKRLLEHSSVQQFRYFKVLIQEFHVKVDIVFI
NAIMGLFEANEMNDAETSKLFKLDMKLVDEPLMYHVSLITTAEQKNFFDLLHFSPLKIHI
SFSMAGSNSGPSAVPQVLNVLLQGIGVTLTDINDIVFKLAYFERDYVFMTNKQLISEATM
HYVGQAIKQAYVLVLGLDVIGNPYGLVVGTMKGIEDLFYEPFQGAIQGPGEFAEGLLFGV
KSMLGHTVGGMAGAVSRITGAMGKGIAALTFDKDYQRKRQEQLNRQPTNLQEGLARSGKG
LVMGVVDGATGVVMKPISGAKEEGVEGFFKGFGKGVVGLVTRPTAGVIDFASGSLGAVKR
ATELSEEAKRVRPPRFFQPDNLVRPYIREEAEGHKILNELEKGKYANTDIYFYHVFVLKD
VVLLTDKRIAYIEHSDLFGGWRVDWTYTWQEISALPKVVDRGIQIFVKGSGKGKKLGNLF
GRADQSKIILIPDDRTRQLLCNKMKEQINQREILISSKPSKKVGDT
NT seq
9861 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgaatcgatcgttaccgaactcctgaacaaggtgttgggagaatatattcaa
aatttggataactcgcaactgaagctcagtttatggggaggcgatgttgtattaaataat
ttattgataaaagaaactgcattagatgtgttggatctacctgttagattggagtttgga
agattaggaaagcttatattgaaaataccatacaaagatatgtggaatggtcaaattgat
gcaattgttgaggaattatttctacttatagttcctactagtcagattgtgtatgatgct
gaaaaagaagcaaaagtacagcttgatactaaacgggcagaacttgcaagagttgagaaa
acaaaacaattggctgatactaaattacaagagaagctagatgattccatgatcgaaaaa
ctcgttgctcgtatgataaagaatattcatgttgaaattaaaagaatacacgtgcggtac
gaagatcatgtttcgtttaaagatcatccgttttcggttggttttacacttaataaattt
gtattagaaagttgtacagattcttggaacacaaatggcaatttgaaagatatgtatgct
attccacaaatttataagctatgtacactggacggtttagctgcatatctgaatacaact
gcagagcaatttagtagtagtgaacaatcggactattcgggtcttttttgctccggtatt
gcaactatagattacactccacctggttatcaatatttgttgggcccaataaacgtaaat
gcgaaattgaagttaaatccaaaaccagagacagatggaagtaattacactattccaaag
gtgtggttggatctagaaatgcaaaaattgaggataggactggcgaaaaaacaataccaa
actctcgttcaattgggcgaagggttggaccaagctcaaaaggctgcaccatacagaaag
tacagaccaaatttgacatcgtatagaggacattataaagaatggtggcgttttgcatac
acttgcatcttagaagaaacggtacgtagaagccgcaggaattggaactggaatcatatg
aaacaacatagggacctttgccgtcaatatgctgacgtgtatcaaacgaaattaacaagc
aagaaagttgcacaggaaatagaagattgtcttacagattgtgaaaggaaattagatatt
ttcaatttggtcatcatcaggcaacaaattgaaatggaagtagaaagattggccgaaaaa
gagaagaacttaaaagcaaaacgtggttggtttggatttctgtggtctggttcgcaagca
gaagagactgaagacttgaactcagcagctgcaataatgcggaaattcgaacaggcgatg
acccctcaagaaaaagaaaaattatacagagctattgattaccaagaaaataccgcaccg
actcactatcctgaaacgtacgagatgatcgatacccgatttcttttacacgaacttcaa
attataattttggatatggctaaagaccatccgtgtattttggatcttcaactacacgat
gttcgagcgtgcttcaagtcgaggccgtccgccaatgcgatttttgttacagcatcgatc
aatgagatgaaacttttaggaacgaagcaagatgaacaggttccatcgctttttaattct
cacgagcatagcgcggatgctgttttattgtccatatcgtatgaaaaaaatccacttgat
aaattgtgtggcgatcgtgtcattgtgaagtcaacgtccgtggatattatttatgatgca
caaactgtaatagaattggttaatttgttcaaagtagaaaactcgtcgactttaaatcaa
ctacaagcagctgcagcagagcaattggaaggtttgaaggaaatgtctgctttaggtttg
gagcatgctattcaaaagcattcaatattggacatgcaggttgacatgcaggcatcccag
ctaatcgttccgcacgatggattctataacgatacaaaatcactgttggtagtaaatctt
ggtagcctaaaaatgcattccttagaaaacccaaaagacgataaaacgaacgtaactgtt
aaacagttaatcagcatgggtaaaagcgaagaggatgtattgttgcatcttagggagcac
agttacgataaatttgttttaaaaatagtcgattttcaagtattagtttcactgccagga
gaggaatggcgcacaattttatcgaaagtagatgattccatgacgctactgcaaccaaca
acactcgaaattcaatttcacaaatgcttgataaccgatgatcctctgcttccaaaactt
agacttattggtcagttgccatcggttgtaatcaatataacggataaacgcttgttacaa
gccctctctattgctcagagtctaccgttcccacaagaagaggaacccacagaacttcgg
aaattttcactcagtaagtccgtttctcaattatctttgttgaaagagctaactacaatt
tccgagaagaagaaggaggcggttgtttcggttaaacagacaactgatttggaaatgaaa
tttgaaatgaaagaattttcgttgttaatttcgtctcaaaagaacggattgataacgccg
tttatgaatctcgaggtgttacaattggaagcagaaatgttacaacggacgtacgatcaa
gaaatattattgagattgggcggtattcaagtgaagcaacattacaaagaaacagacata
tttatggtgaacactcctatgtcatctggtaaagatgaatatctgataacagtacagtat
ataaatgtaaacaaacgttcgccagaatttacgaccaaacacggatccgttattaaatta
ttaaaactggaatttacaacgttggatgttttacttcaccaggaagctcttataagtctt
cttcagtttgctacttatatgcaggatcaaatgaatgctataacgagcagtagaattgag
aaagagcgtcgaatgcgtccacgccatttgacttctattcaagaagaaacgtctgcattc
ttcaaggaacaaattcagaaacaaaagtttagatcaacatctcgtcgaagaaaagcagtg
atcgaggatatagatttaaagattcaagcgaaagttggaactatctgcatgaagttagtc
agtgaatgcagagaaatctctgccttttatatcgccggtatcactgctggattcataatg
aagacttcttattctcaagcaaacgttaatttatcatctatcagtattatagaccttaat
gctgcatccgcttatagagacattgtatcagtagcggagtatacagaatcgttacaaatt
caagctacgatgtacaatattgaaccgacaaatgttgataagaacaatatgtccatcacc
gttttaatgggttgttaccgtattatctttttaaatatgtttgtcactagtattatgagt
tttttgaataattttcaagcagcccagcaagctataaaagacgcgtcagcagcagccgca
gaggctgcgaggacaaacatcaaagatgttcaagaaagcgctgcacgtattgggcttgca
gtgaaaatcaaggctcctgtaatatatgtaccaatgcattcgaaaaacaatcattgttta
acgctggacatgggtaatcttactatatgcaatgtttttaaaaaattggaagttgcaaat
gaaaacggggattccccaattgtcgatgaaatgaaaattgaattacaaaacttgaaatta
tcaagggtgaaattgaacatggagaagtttgaaatcgaaaatgaaatattactattagaa
ccggtcagcttcacattgcttattaaacggaatttatcaactgcgtggtttacatctata
ccggacattgatatgtccggaagattaaataaaattaatgtgctaataagtaaagaagat
tatgtgactgcgttgaaagtgttggaagaaaatttgggcgaagtggccgaagacacgaaa
ttcgtgcaaaatgttagtcaaaacgaaaagaaacttgaagtagaagttctgcaacaccat
cgatccgatgaatttggagaacccactgtgtcaagtatggaagatagagagtttcaagaa
caagtgaacatacacacatccattaaatttgagtttgttatggatagtcttgtgatcagt
ttatttacgggtggttcaaaaatgcttcgatcgcaaagttctcttctacatctgccagag
aatggtttagccaaattctgtttgactcatttcgcgctgaaaggtagaatatttgctgat
ggattaatggcaacatcgatacttctgatgaactgtacgttggacgacacgcgtcaaagt
agacaaggttctcttatcagaattatggaaagaacaacagaagtaccttctatagacgac
ttggaaaatgaatcaaattctgttcgcagcatgttagacatgactatcagacagagttca
aacgacatgttcgtggatgttagagtattttccttcagtataattgtatcacttgattat
ttaatgaaaataaaggactttttcgcgtctgaagaagcaccgtcgaataaggcgatgcct
caaaatatatcgaagaattataacgagtctgtagttaaaaagaaacaaactcaagctgta
ccgaataacaaaatgttcacgattaatttacacgtcgagaagccggatatcattctcctc
gaagacatggatgacataaactcaaattgcatcatactaaataccgagctgttactgaaa
gtacgtttgatgggtgaacatcaagtaataacaggttccataaaagatttaacgattttg
gctggtatatacaatccacagaagagaagcgattggatatatcaggtcctaagaccgtgt
agtattagcgtagcgggttccacgctggaagagaaaggacttcatgtcgatgtttgttgt
actgacattcacgtatccgtttccccaggtgtcatagagatattgaataaagttgttcat
actgctacaaaaacggaagtaaaagatgaagaagttgtaatttctgaaccaaatcacaac
ggattgtggatcataacgccgttcgaagaaaatgatttttggtttttacatacagaggta
ggaatggaagctatggaaaatctttcgttcactgatcacgatgtgacactctataaacca
gaattagcaataatatctgcgccgacaattttgttcacgttagaagcaggcgttggtaat
aaaacattacccatgcttctgcttcacatcgggttccaaagcaacgtaaacgattggagc
tcaaaatctatgagtgtggagggtacaatgtcactgataatggcgtattacaacagccgt
ctcgcgttatgggaaccattgatcgagccaatagaagccactaaaaataaaaaacgaatc
tcaacaccttgggaactagaaactaaaattcaattcaatgacgtggcagtaaattctagg
ggagcgagcgtaatgagcccgacttcggacagcgagccagaagaatggcatcagatccct
aaaatgtctatagatataatatcttctgaaaatttagaaataaccgtaagcaaaacttgt
ttggacgtacttaaacaacttggcaatgcgttctcgtcggcgatggaagccagtgaaacg
ggaaccgcgaaaagtgtggcgccctacgtacttaaaaacgagactggcctagcaatggtt
ctagatttgaaacgcagtcacttcaaggtttttaacgatggatcgacgactgtgaatgat
agcgtcgtttcatacatggaagtaattctggaatctggcgcgtcgatagagctggcaccg
aaaacaacaaaaacagaaatacctttgctcgaccaagtgaaaaccgaatcgattcaagag
agagaagatgacaagtttattatcacgttcaaagaaatcggtggtactttggctatacca
gtcttaagagccgataagagattcttctcgttaagataccggaaagaaagttctgaagaa
tggggtatcgtgtcagatgttgtagtcgatgaaggaagtactatcgttactcttagaagc
atccttcaggtgcataaccatttcagtgaaccgatatcggtatattatatgactaaacgt
ggaaatgaagtcgaatgcgtgggcaccgttgctccggacagtaaattaaatcttccacta
gatgctgtatacacaccaacgaatatttattggttgttttttagcgtcgatcggtacatg
gtttcgatagagccattcgtgtggaaagatctccaaaaaactgtctctatgagcaaactt
ttaaagtgtgaaagtcgaacgaaacaagatgtcgtagaaccattttatataaaggtcgta
ggtgaaatagaacaggtttactttgaaaatactagccgacacacgatggcaagtaccatt
tacaatgttcacttatatccatctgtgtatttgaagaacttcctgcctattgatataatt
gtatgtttacctggagctgtgcaagagaagcttttagaagcaggcacatcttatcaaatt
cctacaattgatcctggaaaatcatacataatcataaagttaccaaattatttagagaag
gattggtcatgtcggggtgaactaatagcaaatccaccggaattttcagtttggtcattc
gagtcttttgacagtgtacaaaaggtcgtgttagacttgggaatgcatacatcttacgaa
catggatctatagtcatggcattgtattgtccgttttggatgttgaataaaacaggttta
atgttgtcttacaagaagtcgagtaagggtggtaaagaacattcaagcccgataaagagt
ttgggttgtgtcaggaaaccctgtcaacaacgcggtgaatacaggaaggagaaaccatgt
tcagtgagcggagatgattttttgaatgtattgtatcacccggagaatttcaaaggaccc
atattattttcatttcgctcgaaagtattttttgggaaaaagaaggcgatgattcgaatc
gaagacggcgaatggtctgagaagttcccaatagatgttgcaggaagcgaaggagtagtc
gtttgcagatataatggattgacgtaccagatcggggtgcacaatcagttgacgtacaat
tctttaacgaaacagattacgtttactccatactatgtactcataaataattcgaatttt
ctgatcgaatgtcaagaaggtgacagaccagccgatcctatgatgaagatccctcctggc
gaatgtactgctctttggccccgttctgaaaatgaacaaaaaactttaagagctaaggtc
gctagtgaacctgaaaaaactgcaccattcgtttatacagatagtcatacaactttatta
aaattaaataataagtacggtggaatcaatgtggatgtacaaataagcgagggaggagtt
tacatttccctttctgcttatacttatggaaatgctccggctctaattatcaatcacacg
ccgcatactattcatttttgggagaaaggttcattgaacgtcagatccgtgcagtcattt
aataggatgttttatacatgggagaatccagctggacctcggaaattaatgtgggaggat
aataataagaaagagatcgaacatactctacgaaaggattttttaggcgcttttcatttg
ccagatttggacgaggaagtgtttcacgtatcgtttttggacggcacgcaacgaatactt
ctgttcacaacgagtatgaaaattgcagaagactgtcagcttgtaggtgatcttgaaact
atagaacaggaagtgacaataagtattcacggggttggactttcgcttgttaacaacgta
acgagaatagaattattatatatgtgcatagccagttctgatatcatatgggaaacgagt
aagtcatccgctcatcgttggcgtggtatcagtacaagagatgtgatacttatcgaagaa
ggttatcagaaatatatacgggaattacaaataggaaaggacccaccatacagagtgatg
ctcgaaccaaaattggaggtcgattacttgaacatggaaatgttaagaccacatcataga
actctgcgacgcacgtttcaaaccggtctatggttacagtatcgagcatcgctacaccaa
gtccagttgcacgcaaaaatcaatagacttcaaatcgacaatcaactttccgattgtgtt
ttcccagttatattagctccagttccacccccaaaaagcgtcacgcaaagtaccgtaatg
aaaccatttgctgaactcggcatggttaaacgcttattagagcacagcagtgtccagcag
tttcggtactttaaagttcttatacaagaatttcacgtgaaggtggatattgtatttatt
aatgcaataatggggctgttcgaagcgaatgaaatgaacgacgcggaaacgagcaaacta
tttaaactggacatgaaattggtagatgaacctttaatgtatcatgtcagtttaatcact
acggcagaacagaagaacttctttgatttacttcatttctcacccttgaagattcacata
agtttctcaatggctggtagtaacagtggaccttctgcagtgcctcaagtattaaatgta
ttattacaaggaataggtgtcactttaaccgacatcaacgacattgttttcaaactagcg
tattttgaaagggattacgttttcatgaccaacaagcaactcatttctgaagcaacgatg
cattacgtgggacaagcaattaaacaggcgtacgtcctcgttttgggactcgacgtaatt
ggcaatccgtatggacttgtagttggtactatgaaaggtattgaagatctgttttacgaa
cctttccaaggcgctatacaagggcccggagaattcgcagaaggtttactcttcggcgta
aagagtatgttgggccatactgtcggaggaatggctggagcagtttctagaataaccgga
gctatgggcaaaggtatagctgctcttaccttcgataaagattaccaaaggaaacgacaa
gaacagctcaacagacaacctactaacttgcaagaaggtcttgctcgtagtggaaagggt
ttagtaatgggtgtagtcgacggtgcaactggcgtggtaatgaaacctatatcgggagct
aaagaagaaggtgtagaaggtttcttcaaaggttttggaaaaggtgtcgttggcctcgtc
actagaccaactgctggcgttatagactttgccagtgggtcgcttggagcagtgaaacgc
gccaccgagttgagcgaagaagcgaaaagagtaaggccgcctagatttttccaaccagac
aatttagtcagaccatatatacgggaagaagctgaaggacacaagattctaaatgaactg
gagaaaggaaaatacgcaaacaccgatatctatttttatcatgtattcgttcttaaagat
gtagtgttgctcacagacaagaggatagcgtacatagagcatagcgatttattcggtgga
tggcgagtcgattggacttacacgtggcaagaaatcagcgcgttaccgaaagtagtcgat
agaggaatccagatttttgttaagggtagcggtaaggggaaaaaactcggaaacttattt
ggtcgcgcagaccaatcaaaaataattttaataccagatgatagaacgagacagctttta
tgcaataaaatgaaagaacaaatcaatcagagagagattttaatatcatcgaaaccaagc
aagaaagtaggtgacacataa
DBGET
integrated database retrieval system
