Colletes gigas: 122396202
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Entry
122396202 CDS
T07492
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cgig
Colletes gigas
Pathway
cgig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122396202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgig03400
]
122396202
DNA repair and recombination proteins [BR:
cgig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122396202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
122396202
NCBI-ProteinID:
XP_043250330
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSKVNTLYNYFKSPKTDKRPNNKPVPEAKPSTPKRTREQRNTAKTPNKGKENKNVEDRKK
LYKDNEEDEEDEEVEPVRPKKRRLIIPDEESGEDSGDEFKPDPKDVSEESDSGSEGDPES
EIQTQSEEETPEKKRKLPNDRRSKNQGGTKKIAKLDNKEIKVPQQNLNQGSNNSVSESWP
HLKYDFLQPNKIKDISRKSPDDPNYDPKTVYVPLDFLNQQTPAMRQWWDLKSKHIDCVLF
FKVGKFYELYHMDAVTGVKELNLTYMRGEFAHSGFPEIGYGRFSGSLIEKGYKVARVEQT
ENPDMMTQRCSKMNRPTKYDKVVKREICQISTKGTRVFTSLDVEPSTPNSNYLLSLVEKR
PSGTNLSHYGVCFLDTTIGDFILGQFEDDRCNSRILTLLAHYPPVHVVYERGNLSQKTLQ
ILNNNLAACIKEPLLRESQFWSSTTTLKNLHEGEYFKSDSSFSWPTGLKPFLNEGDSLGL
TPDDDKELAVHALGGCVYLLKEYFLEQQLLSRGRFKLYVPPDFSSEPSKTTKFANNMVLD
AVTINNLRIFGEGSLMKTLDRCCTAFGKRLLREWICRPSCRKDVIIERQEAIQELMDRSD
TVQTARSILAGLPDLERLLSKIHGHGNLARMNNHPDGRAIMFEGKTYSKRKILDFTNILD
GFEDVLKVVALFEDFKSGLLSRYIKVEPDGEFPSLRETLDYFKSAFDHEEAKKEGCIVPK
EGVDSEYDSVLMELAEVKKDAEQYLVKQRQHFGVKVTYHGSDKKRYQIEIPDSQVKKVGS
GFELQSQRKGFRRYYTAEAKELLSRQINAEEHRNKVLKDLNSRIFAQFSEKYDMWNSAIY
KLSTLDVLISLTEYALSGEMCIPEVNDGTDGNIFIDMRDGRHPCCHSDNFIPNDTLLGSG
DSASFVILTGPNMGGKSTLMRQVALLTIMAQMGSFVPASSCSFTIVDRIFTRLGANDDIL
AGQSTFLVELSETSAILQHATPYSLVLLDELGRGTSTYDGTAIAASVVNALTKLKCRTLF
STHYHSLVEDYKNDKNVTLAHMACMVENEEEDEITQETVTFLYKLSEGACPKSYGFNAAR
LAGVPSIITNRAHEISKQLEQETNQKHFFAAVCKADGPAIRDLIAAM
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggtaaacacgttgtataattatttcaagtcaccgaaaactgacaagagaccg
aataataaaccggtgcctgaagctaaaccttcaacgccgaaaagaacgagggaacaaagg
aacacagctaaaactccaaataagggcaaagaaaataaaaatgttgaagatcgaaaaaaa
ctttacaaagacaatgaggaagatgaagaggatgaagaagttgaaccagtacggccaaaa
aaacgtagattgatcatacctgatgaagaatctggagaagattctggagatgaatttaaa
cccgatccaaaagatgtgtcagaggaatctgattcaggcagcgaaggagaccctgaaagc
gaaatacagacacaaagtgaagaggaaacaccagagaagaaaaggaaattgcctaatgac
agaaggagtaaaaatcaaggaggcacaaagaaaattgccaaattagataataaagaaata
aaagtacctcaacaaaatctgaaccaaggatcaaataatagtgtttcagagtcatggcca
catttgaagtatgattttcttcaaccaaataaaataaaagatattagtagaaaatctcca
gatgatccaaattatgatcctaaaacagtttatgttcctttagactttctaaatcaacaa
accccagcaatgagacagtggtgggatttgaaaagcaaacatatcgactgtgttttattc
tttaaagtaggcaagttttatgaattgtaccacatggatgctgtcactggagtcaaagaa
cttaatctcacgtatatgcggggagagtttgcacattctggatttcctgaaatcggatac
ggtcgtttctcgggaagccttatagagaaaggatacaaagtagctagggtggaacagaca
gagaatccagatatgatgacacaacggtgtagtaaaatgaataggccaacaaagtatgac
aaggttgttaagagagaaatttgtcaaataagcaccaagggtacaagagtattcacttca
ttggatgtagaaccatcaacaccgaattcgaactatctattgtctcttgtcgaaaaacgt
ccatctggtacaaacctatcccattatggagtatgtttcttggatacaacaataggggat
tttatccttgggcaattcgaagatgaccgttgcaattccagaatattgaccttacttgct
cattatcctccagttcatgttgtatacgaacgtggtaatttgtctcaaaaaacattgcaa
attttaaataacaatttagcagcgtgcattaaagaaccacttctacgcgaatctcaattc
tggtcgtctacaaccacattgaaaaatctccacgagggagaatactttaaatcagattct
agtttttcatggcctacaggcttgaagccatttcttaatgaaggcgactctttaggctta
actccagacgatgacaaagaattagccgtgcatgctttagggggatgcgtttatctactc
aaagaatacttcctcgagcaacaattgttgtctcgaggacgattcaaattgtacgttcca
ccggatttctcgagcgagccttccaagaccactaaatttgcaaataatatggttttagat
gctgtcactattaacaacttgagaatttttggcgaagggtctctgatgaaaacattagat
cgttgttgtaccgcgttcgggaaaagattattacgcgaatggatctgtcgaccatcctgc
cgcaaagatgttataatcgaacgtcaagaagctattcaagaattgatggatcgttcagat
acggtacagactgctcgtagcatattagccggtcttccggatctagaaagattattaagc
aagattcacggtcatggaaatttggcaagaatgaataatcatcctgatggcagagcaatt
atgttcgagggtaaaacctattcaaagagaaagattctagattttactaatattctggat
gggtttgaggatgtcttaaaagtagttgctttattcgaagatttcaagagtggtttgtta
agccgatacattaaagtggagccggatggtgaatttccttcgttaagagaaactttagat
tattttaagtccgcgttcgatcacgaagaagctaaaaaggaaggctgtatcgttccgaaa
gaaggagtcgactctgaatacgactccgttttaatggagcttgcggaagtgaagaaggat
gcggaacagtacctcgtaaagcaaagacagcactttggcgtgaaagtgacgtatcacgga
tcggataaaaaacgttatcaaatagaaattccggactcgcaagtaaagaaagttggttct
ggattcgaacttcagtcgcagagaaaaggattcaggcgttattacaccgccgaggcaaag
gaacttttaagtcgtcaaataaatgccgaagaacacagaaataaagtgttgaaggatttg
aacagcagaatatttgcacagtttagcgaaaaatatgacatgtggaactccgccatttat
aaactgagtaccttggacgttctaatctctttaaccgaatatgctctcagcggtgagatg
tgtatacccgaagtcaacgatggcacggatgggaatatatttattgatatgcgagacgga
cgacatccatgctgtcattcagataatttcatacctaatgatactttgttgggatccggg
gattctgcttctttcgtgattttgactgggccaaacatgggcggtaaatcgacgctgatg
cgccaagtcgcgcttctcacgataatggcacaaatgggaagtttcgtaccggcaagttct
tgtagtttcacaatagtggatcgtatctttacgaggctaggagcaaacgatgatatacta
gctggtcagagtacatttttggtcgaactaagcgaaacctcggcgatattgcaacacgct
acaccgtactcgttagttttgttggacgaattgggtcgcggtacatcaacgtacgatggt
acagccatagctgcgtcagtcgtaaacgcgcttacaaaactaaagtgtcgcacattattc
tcgacgcattaccattctctggtagaagattacaaaaacgataaaaatgttacattggct
catatggcgtgtatggtggagaacgaggaagaggatgaaatcactcaggaaactgtaaca
ttcttatataagcttagcgaaggagcttgtccaaaatcttacggtttcaatgctgctcga
ttagctggcgtgccatccataatcacaaatcgggcgcatgaaatttctaaacagctcgag
caggaaaccaatcagaaacacttcttcgccgctgtatgcaaagccgatggaccagctata
agagacctgattgctgcaatgtaa
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