Colletes gigas: 122397045
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Entry
122397045 CDS
T07492
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cgig
Colletes gigas
Pathway
cgig03013
Nucleocytoplasmic transport
cgig03015
mRNA surveillance pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122397045
09122 Translation
03013 Nucleocytoplasmic transport
122397045
03015 mRNA surveillance pathway
122397045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122397045
03041 Spliceosome [BR:
cgig03041
]
122397045
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122397045
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122397045
Spliceosome [BR:
cgig03041
]
Complex C
Other components
EJC/TREX
122397045
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122397045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122397045
NCBI-ProteinID:
XP_043251799
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDIPSKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgatcttttggattatgaagatgaggaacagactgagcaagtagtt
gacggtagtggagatataccttccaaaaaagaagtcaaaggcacatatgtatctatccac
agtagtgggtttagagattttcttttaaaacctgaaatattacgtgcaattgttgactgt
ggttttgagcatccatctgaagtacaacatgaatgtattcctcaagcagtgcttggcatg
gatatattatgtcaagcaaagtctggtatggggaaaacagctgtatttgtgttagcgact
ctacaacaattagaattaacggaaaaccaagtttacgttcttgtcatgtgtcacacgcga
gaacttgcttttcaaattagtaaagaatatgaaagatttagcaagtacatgcctcatgtg
aaggttggagtctttttcggtggcttgccaattcagaaagatgaagaagttctgaaaaac
acatgtcctcatatcgttgtgggcacgcctggtcgtattcttgctcttgtacggaataaa
aaattaaacctgaagcacctgaaacattttatactcgacgagtgcgataaaatgcttgaa
ttactagacatgcgtagggatgtgcaggaaatatttagaaacactccacacggcaagcaa
gtcatgatgttcagcgctacgttatccaaggagatacgtcctgtctgcaaaaaatttatg
caagatcccatggaagtctatgtggatgatgaagcgaaactcacattgcatggtctacaa
cagcattatgtcaaacttaaggagaatgaaaagaataagaagctatttgaattacttgat
gttcttgaattcaaccaggttgttatcttcgtgaaatctgtacaaaggtgtatggctttg
gcacaacttctaaccgaacaaaatttccctgctatcgggatacatagaggcatgacccaa
gaagaacgattatcaagatatcaacaattcaaagattttcaaaagcgtatacttgtagct
acaaatttgtttggccgtggcatggatattgaacgtgtaaacatagtatttaattacgat
atgccagaagattctgatacgtacctccatcgagtagccagggctggccgtttcggtact
aagggtcttgcaattacattagtaagtgacgaaagtgatgccaaaatactgaatgatgtc
caggaaagatttgatgttaatattacagaattaccagatgaaatagatttggcttcatac
attgaaggacgataa
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