Colletes gigas: 122397333
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Entry
122397333 CDS
T07492
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122397333
03036 Chromosome and associated proteins [BR:
cgig03036
]
122397333
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122397333
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122397333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_3
HHH_9
Tex_YqgF
Spt6_S1
S1_RRP5
HTH_10
OB_RRP5_4th
Tex_N
Motif
Other DBs
NCBI-GeneID:
122397333
NCBI-ProteinID:
XP_043252387
LinkDB
All DBs
Position
Unknown
AA seq
1767 aa
AA seq
DB search
MADFLDSEAEESEEEEELNDNEKKKLKKLKAVEESEEEEEDDDEDRLREELKDLIDDNPI
EESEGEDSDGSGGSKKRKKSDDEDFDDRLEDEDYDLIEENLGVKVERKRFKRLRRIQDEE
SEEEQEKEVDDDRDAIANELFEGSGDEREISMEDERRSERSHRPEMETFDEEGSEGEYTD
ADDFIVDDDGRPIAEKRKKKRPIFSDAALQEAQDIFGVDFDYDEFGKYGEEDYEEDEEED
EEDEYMDEEDAERPRRPKKQLKKKTTRKSIFEIYEPSELKRGHFTDMDIEVRNTDIPERM
QLRTVPVTPVLEGSDELDLEAEWIYKQAFCRSTISIQDAHLNAEAKERARKGPQTIGKIK
KALDFMRNQHFEVPFISFYRKEYVLPELNINDLWKVYKFDAKWCQLRQRKENLLKLFDKM
RNYQLDEIMKNPDAPLPESVRVIKDDDIERLKNVQTSEELNDVYHHFMLYYSHEIPAMQE
AVRLKEKEQRREAKIQKRKQQIAEAEENGEDPPPEEEVEVVEEEEPDETLKQAIRTGPYS
ICKRAGLDSLAKKFGLTPEHFAENLRDNYQRHEVDQEPTEPLTIANEYCSQILGTPEEVV
KASQLMVAIQLAREPLVRKCVREMYMERAKISIKPTRKGIKEIDENHPIYGMKYLKDKPV
RDLVGDQFLNLITAEEDKLITITMSDSIEGNTSNNYVDEMKQLYYRDEFSKNVQDWNTLR
VGSVEMALTRLVIPSLKKELRTNLIAEAKECVMKACCRKMYNWIKVAPYTCEFPEEEDEE
WDTTKGLRVMGLAYVPDYSQAAFTCLIAPDGECTDYLRLPHLMKRKNSYREDEKTMKEAD
LLALRNFIATKKPHVVAISGESREAMMIAADIKECIANLVDEEQFPSIQVEICDNDLAKI
YSNSNKGVSEFRDYPELLRQAISLARRMQDPLVEFSQLCTADEEILCLKYHSLQDHLPKD
ELLENLYLEFVNRVNEVGVDVNKAVQQAYCGNLVQFVCGLGPRKGQALIKMLKQTNQRLE
NRTQLVTACHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVD
ALEYDDEDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCVTLYDIRAELNSRY
KDLRVPYQSLSAERLFDILTKETPETFYVGKLVLATVVGISHRKPQGDQLDQANPVRNDE
TGLWQCPFCLKNDFPELSEVWNHFDAGACPGKATGVRLRLDNGISGYIHIKNLSDRHVAN
PEERVSIGQIIHCRIIKIEVERFSVECTSKSSDLADKNHEWRPQRDPFYDTEAEQKDLKI
EEDAKKAKQRQTYVKRVIVHPSFHNISFAEAEKLMQTMKQGEAIVRPSSKGADHLTVTWK
VTDDIYQHIDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAYASELLDFKYY
KPNVEGIKDKAEEILKEQKKENPGGIPYIISAAKNYPGKFLLSYLPRTRCRHEYVTVSPE
GFRFRGQMFGRVNDLFRWFKEHFRDPVPGQSTPSTPRGAMTSRTPYHTTPGAVSGMNQEA
IQRVAQNLPHHMLHSLSQVANQTPHHYPPHTPGTASAAGYGGVHTYPNTPYTPSGQTPFM
TPYQTPHHTPHHGQPTPRYGQQTPNHQQGPFIHPPPPSVTSGHHRSTPSHRPTPPMSTPG
DPMDWKKAAEAWARLKSGPRVSGSTPRYDESRKTPRNYEETVGRTTPRNRTSVRTPSYKS
PRGTPHTNSSPRSMSLSGDGTPLYDES
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttcctagattcggaagcggaggaaagcgaggaagaagaagagttaaacgat
aatgaaaaaaagaaactgaaaaagttaaaagctgtggaagaaagcgaggaggaagaggag
gatgacgatgaagatcggttgcgcgaagaactcaaagatcttatagacgacaatcctata
gaagaaagcgaaggggaagatagcgatggttctggtggttctaaaaaacgtaaaaagagc
gatgacgaagattttgacgatcgtctagaagatgaagattatgatctaatagaagaaaat
ttaggtgtcaaagtcgagaggaaacgtttcaaacgcctccgcaggattcaagatgaggaa
tcggaggaggaacaggagaaagaggtcgacgatgatagagatgccatcgcgaatgaactt
tttgaaggatctggagatgaaagagaaattagtatggaagatgaaaggagaagcgaacgt
agccacaggcctgaaatggagacgttcgatgaggagggaagcgaaggggagtacacggac
gcggatgattttatcgttgacgacgatggtagaccgatcgctgagaaacgtaaaaagaaa
aggccgatattctccgacgcggctttacaggaagcccaagacattttcggcgtcgatttc
gattacgatgaatttggtaaatacggcgaagaagactacgaggaagacgaggaggaagac
gaggaggacgagtatatggatgaagaggatgctgaaaggccgagaagaccgaagaaacag
ttgaagaagaaaaccacgagaaaaagtatatttgaaatttacgagcccagcgaattgaag
cgtggtcatttcaccgatatggatatcgaagtacgtaacacggatataccagagagaatg
cagcttcgaacggttcccgttactccagtcttagagggttccgacgagctggatcttgag
gcagaatggatttataaacaagcattctgccgatcaactatttcaattcaagacgctcat
ttgaacgcggaggccaaagaaagggcccggaaaggacctcagacgatcggcaaaattaaa
aaggctttagactttatgcgaaaccaacatttcgaggtaccgtttatatcgttttacaga
aaggaatacgttctaccggagttgaacatcaacgatctctggaaggtgtacaaatttgac
gcgaaatggtgtcagcttcgtcagaggaaagaaaatttgttaaaattgttcgataaaatg
agaaattatcagctggatgaaattatgaagaacccagacgcccctttgccggaaagcgtg
cgagtaatcaaggatgatgatatagaacgacttaagaacgtgcagaccagcgaagaattg
aatgacgtttatcatcattttatgctgtactatagtcacgagataccagcgatgcaggag
gccgtgcggctcaaggaaaaagaacagcgtcgggaggctaagattcagaaacgaaagcaa
cagatcgcggaagccgaagagaacggcgaggatcctccgccggaagaagaggtggaagtg
gtggaggaagaggaaccggacgaaacgttgaaacaagcgatacgaactggtccgtattct
atctgcaagcgagcgggcctcgacagtcttgcgaagaaattcggtctcaccccggagcac
tttgccgaaaatttgcgcgacaattatcagcgccatgaagtagatcaagagcccactgaa
cctttgaccatcgccaacgaatattgcagccagatactcggtacgccggaagaagtggtg
aaagcttctcaattgatggtagctatacagttagcgcgcgaacctttggtgagaaaatgc
gtgagagaaatgtacatggagagggcgaagatatcgatcaaacctacgagaaagggaatc
aaggagatagacgagaatcatccgatttacggtatgaaatacctgaaggataaacccgtg
cgcgatctcgttggcgatcaattcttgaacctgatcacggccgaggaagataaattgatc
acgatcacgatgagcgacagcatcgaggggaacaccagcaacaattacgtcgacgaaatg
aagcagctctactatcgggacgagttcagcaagaatgttcaagactggaacaccttgaga
gtcggaagcgtcgaaatggcgttgacgcgtttggttataccgagtctgaagaaagagctg
agaacgaaccttatcgcggaggccaaggaatgtgtgatgaaagcttgttgccgtaagatg
tacaattggatcaaggtcgctccttacacgtgcgagttcccggaagaggaagacgaggaa
tgggataccaccaaggggcttcgcgtgatgggcttggcttacgttcccgattactctcag
gccgcgttcacctgtctgatcgctcctgacggggaatgcacggattacttgagattaccg
cacctaatgaaacgcaagaacagctaccgcgaggacgagaagacaatgaaggaagccgat
ttgttggcgttgcggaacttcatagccaccaagaagccgcacgttgtggcgataagcggt
gaatctagagaggcgatgatgatcgcggctgacatcaaagagtgtatcgcgaacctcgta
gatgaagagcaattcccatccatacaagtggagatttgcgacaacgaccttgccaagatc
tactcgaacagtaacaagggcgtgtccgaattccgtgattacccggaattgctgcgacaa
gccatttcgctggctaggagaatgcaagacccgttggtggagttttcccagctgtgcacc
gcggacgaggagattctgtgcctcaagtaccacagcttacaggatcatctaccgaaggac
gaactcctcgagaacttgtatttagaatttgtaaatcgcgtgaacgaagtcggcgtcgat
gtcaataaggcggtgcagcaggcctattgtggaaatttggtgcaattcgtatgcgggttg
ggtcctcgaaagggccaggccctgatcaagatgctgaaacaaacgaatcagaggttagag
aacaggacgcagctggtgactgcctgtcacatggggcccaaggtcttcatcaattgcgcg
ggatttattaagatagataccaacagtctgggtgacagtaccgaggcgtacgtggaagtg
ctggacgggtctagggtacatccggagacgtacgaatgggctaggaaaatggctgtggat
gcgttggagtacgacgacgaagacgcgaatcccgccggtgccctcgaagagatcctagag
tcgcccgaaaggttgaaggatctggatttggacgcgttcgcggaggagctcgaaagacaa
ggtttcgggaataagtgcgtcacgttgtacgatatcagggcagaattgaacagcagatac
aaagatttacgagtaccgtatcaatcgctcagcgcggaaagattgtttgatattctgacg
aaggaaacaccggagacattttacgtgggcaaattggtgttggcaacggtggtgggaatc
agtcacagaaaacctcaaggcgatcagttggatcaagcgaatccggtgagaaacgacgaa
acgggtctgtggcagtgtccattttgtttgaaaaacgacttccccgagctctccgaagta
tggaatcatttcgacgctggagcttgtccaggaaaagctaccggcgtccgattgaggtta
gacaacggaatatcgggttacatccacataaagaatttatccgacagacacgtcgcgaat
cctgaagagagggtgagcatcgggcaaataatacattgtcgaataattaaaatcgaggtg
gaacgattcagcgtcgaatgcacgagcaagagcagtgacctcgcggacaagaatcacgaa
tggagaccgcaaagagatcctttttacgacacggaggcagagcagaaggacttaaaaatc
gaagaagacgcaaagaaggccaaacaacgacagacgtacgttaaacgggtgatcgttcat
ccgtcgtttcacaatatcagtttcgcggaggctgagaagttgatgcaaactatgaaacaa
ggagaggcgatagttaggccaagcagcaagggcgcggaccacttgacagtcacgtggaaa
gtaaccgacgatatttaccaacacatcgacgtgagagaagaaggaaaggaaaacgcgttc
tctttgggacagagtctatggatcgggaatgaggaattcgaggatttggatgaaattata
gcgagacacgtaaatccgatggccgcgtatgcttcggaactgttggatttcaaatattat
aagccaaacgtagaaggtatcaaagataaagcggaggaaatattgaaggaacaaaagaaa
gaaaatcctggagggattccgtacataatatccgccgcgaagaattatcccggaaaattt
cttctgtcttatcttccacgaactcgatgccgtcacgagtacgtgacagtgtccccggag
ggatttcgattcaggggacaaatgttcggcagagtgaacgatctgttccgctggtttaaa
gaacactttcgggatccggtgcccggacagtctactcccagtactccgcgtggcgctatg
acatccagaacgccataccatacaacaccaggagcagtgagcggaatgaaccaagaagcg
atacaaagggtggcacaaaatctccctcatcacatgttacactctttgtcgcaagtagca
aatcaaaccccacatcactatccaccgcatactcctggaactgcaagtgcagccggttat
ggcggagtacacacttacccgaatacaccctacacgccatctggtcaaacacctttcatg
acaccgtaccaaacaccccaccataccccacaccatggtcaaccaactcctagatacgga
caacagacgcccaatcaccaacagggtcctttcattcatccacctcctccttcggttact
tctggtcaccatagatccactccttcgcacagacctacaccacctatgtcgacacctggc
gatcccatggactggaaaaaagcggcagaagcctgggcgagattaaaaagcggcccacga
gtatccggttcgaccccaagatatgacgagtctaggaaaactccacggaattacgaagaa
actgttggaagaacaacgccgcgaaacagaacttcggtgcgaactccgtcttacaaatct
cctcgaggaacgccacacaccaattctagtcctcggagtatgtctcttagcggagacggt
actcctctatatgatgaaagctaa
DBGET
integrated database retrieval system
