Colletes gigas: 122397567
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Entry
122397567 CDS
T07492
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
cgig
Colletes gigas
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122397567
03036 Chromosome and associated proteins [BR:
cgig03036
]
122397567
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122397567
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122397567
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
Tex_central_region
HHH_3
HHH_9
Spt6_S1
Tex_N
Tex_YqgF
S1_RRP5
OB_RRP5_4th
HTH_10
m_DGTX_Dc1a_b_c
Motif
Other DBs
NCBI-GeneID:
122397567
NCBI-ProteinID:
XP_043252748
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MADYLDAEAEESEEEEELDVYERRKLKKLRAMQDSDDEDDDDEGQIDGLIDDNPIEDNDG
EDSDGSGSGKRKKSDDEDFDDRLEDEDYDLLEENLGVKVERKHRFKRLRRIQDEESEGEE
EGETDERNAIANELFQGSGDEDDERSEISHRPEVEAFDEEESEDEDDFIVDGDGVPITEK
KRKKKHIFSDAALQEAQDIFGVDFDYDEFGKYEDDEFDEDEEEDADDEYLEDGEDRPRRS
RKHFKKKTTKKSIFEIYEPSELIRGHFTDVDNEIRTTDIPERMQLRSIPITPTAEGSDEL
DLEAEWIYKQAFCQPTISVQDAHLNEEAKERAKKGPQTVNKIKKALDFMRNQNFEVPFIS
FYRKEYVLPELNINDLWKIYKFDTKWCQLKQRKENLLKLFEKMRNFQLDEIMKNPDAPLP
ENIRVIKDDDIERLKNVQTFDELNDVYRHFMLYYSHDLPAMQDDLRKKEIEIRKKSRIEK
RKQQIAEAEENGISLEETIDIEEDDEGQIDETLKQPVRKGPYSVCRKAGLDGLAKKFGLT
PEHFAENLRDNYQRHEVEQESIEPTVVAEEFCSAVFKTSNEVLKAVQLMVAIQLAHEPLV
CKCVREMYMERAKLSVRPTKKGIKEIDENHPLFTIKYLKDKPVRDLIGDQFLKLIMAEED
KLITISFSDMIEGNTTNNYIDEIKQLYYRDEFSKSVQDWNALRTGSVEIALNRIVIPQLK
KELRSNLLIEAKECVMKACCRKMYNWIKVAPYSCEFPDEDDEDWNTSKGIRVMGLAYISD
PSVSAFTCIISPDGECTDYLRLPHLLKRKNSFRENEKMMKEADLLAVKNFIATKKPHVVV
VSGESREALMIVADLKECITNLVEDEQFPAIQVEICDNDLAKVYANSNKGTSDFRDYPEL
LRQAISLARRIQDPLLEFSQLCTVDEEIMCLKYHPLQDQLLKEDLIENLYLEFINRVNEV
GVDLNRTVQEPYTSNLVQFVCGLGARKAQSLIKILKQTNQRLENRTQLVTAFHMGPKVFV
NCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDALEYDDEDANPAGALEE
ILESPERLKDLDLDAFAEELERQCFGNKCITLYDIRAELNCRYKDLRVAYQSLNTEKLFD
ILTKETPEMFYVGKLILATVVGISHRKPQGDQLDQANPVRNDETGLWQCPFCLKNDFPEL
SEVWNHFDAGACPGKATGIRLRLDNGISGYIHVKNLSDKHVNNPEERVHVGQVIHCRITK
IEVERFSVECTSKTSDLIDKNREWRPQKDAYYDTEAEENDTKIEEDTKKAQQRQTYVKRV
IIHPSFHNISFAEVEKLMQTVKQGETIIRPSSKGSDHLTVTWKVTEKIHQHIDVREEGKE
NVFSLGRSLWIGNEEFEDLDEIIARHINPMAVYASELLDFKYYKPNVEGLKDKAEEILKE
QKKQNPGGIPYIISAARNYPGKFLLSYLPRVRCRHEYVTVTPDGFRYRGQIFNRVNDLFR
WFKEHFRDPIPGQSTPGTPHGGMTTRTPYISTPGINGVNSDAIQKVAQNMPHHMLHSLSK
VASQTPHNYPPCTPGTASVNNYGIYGSTPYTPSGQTPFMTPYHTPHHTPHHPQTPSHNQG
PFLQPIPPAMNSNTHRASRSHRSTSSDSTNWTKAAEAWARAKQSTSRNFNITPRYDDNRR
TPRNQETQNDRAVPRNRTPSVRTPSYKSPKGTPFTNSSPRSMSISGDGTPLYDENW
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggcagattacttggacgccgaggcagaagagagtgaggaagaagaagaactcgatgtt
tatgaaaggagaaaacttaaaaagttaagggctatgcaggacagtgacgatgaggacgat
gatgatgaaggacaaattgatggacttattgatgataatccaatcgaagacaatgatggt
gaagatagcgatggatcaggttctgggaaacgtaaaaagagcgatgatgaagattttgat
gatcgtttggaagatgaagattacgatctacttgaagagaatttgggtgtaaaagttgag
aggaaacatcgttttaaacgtctccgcagaatacaagatgaagaatctgaaggagaagaa
gagggagagacagatgaaagaaatgctattgctaatgaactgtttcaaggatctggagat
gaagatgatgaaagaagtgaaattagtcatagacccgaagtagaagcattcgatgaagaa
gaaagtgaagacgaagatgattttattgtggatggtgatggtgtacctataaccgagaaa
aaaagaaaaaagaaacatattttttcagacgcggctttgcaagaagctcaagatatattt
ggtgttgattttgattatgatgaatttggaaagtacgaagatgacgaatttgacgaagac
gaagaggaggatgcagatgatgaataccttgaagatggagaagaccgaccgagacgatcg
aggaaacattttaaaaagaaaaccacaaagaagagtatttttgaaatatatgaacctagt
gaacttatccgtggacattttactgatgtggacaacgagattcgtactacagacattcct
gaacgtatgcaacttcgttctattccaattacaccgaccgcagaaggttcggatgaatta
gatcttgaagcagagtggatatacaagcaagcattctgtcagccaacaatttcggtacaa
gatgctcatctaaatgaagaagccaaagaaagagctaaaaagggcccacaaactgtcaac
aaaattaaaaaagctttagatttcatgcgtaatcaaaatttcgaagttcctttcatctca
ttttataggaaggaatatgttttaccagaattaaatattaacgatttatggaaaatatat
aaattcgacacaaaatggtgtcagcttaagcaaagaaaagagaatttattgaaattattt
gaaaagatgagaaattttcaattggatgaaattatgaaaaatcctgatgctccgttaccc
gagaatatacgggtcattaaagatgatgatattgaacgacttaaaaatgttcagactttt
gacgaattaaatgatgtttatcgacactttatgctttattatagtcatgatcttccagca
atgcaggacgaccttcgtaagaaggaaatagaaatacgaaagaaatctagaattgagaaa
aggaaacaacaaattgcggaagctgaagaaaatggaatttctctggaagaaactattgac
atagaagaagatgacgaaggtcaaatagatgaaacattaaaacagccagttagaaaaggt
ccttattccgtttgtagaaaggctggtttagacggacttgctaaaaagtttggtctcacg
ccggaacacttcgctgaaaatctccgagataattatcaacgtcacgaagtagagcaggaa
tcaatagaacctactgtagtagccgaggaattttgctcagcagtttttaaaactagcaat
gaagtgcttaaagctgtgcaattaatggttgcaattcaattagcacatgaaccgttagta
tgtaagtgcgtcagagaaatgtatatggaaagagcaaagttatctgtaagaccgactaag
aaaggaattaaagaaatcgatgaaaatcatcctctttttacgataaaatatcttaaggac
aagcctgtacgagatcttatcggagatcaatttttaaaattaattatggctgaagaagat
aaattaattacaatttccttcagtgatatgatagaaggaaatactaccaataattatatt
gatgaaataaaacaactatactatagagacgagttcagtaaaagtgtacaagattggaat
gcactgagaactggcagcgttgaaatagctttaaatcgtattgtaataccacagttgaag
aaagaattacgatctaatcttttaatagaggcgaaagaatgtgttatgaaagcttgttgt
cgtaaaatgtataattggataaaagttgctccatacagttgcgaattccctgatgaagat
gatgaagactggaatactagtaaaggaattcgagtaatgggtttggcttatatatccgat
ccgtctgtatctgcttttacttgtataatttctccagatggagagtgtacagattacttg
agattaccacatttattaaaacgcaaaaatagttttagagagaatgaaaaaatgatgaag
gaggctgatttgttagcagttaagaatttcattgctacaaaaaaaccacacgttgtggta
gtgagtggtgaatctagagaagcattaatgatagtagcagatctgaaggaatgtattact
aatttagtagaagacgaacaattccctgcaatacaagtggagatatgtgataatgactta
gctaaagtttatgcgaatagtaacaaaggtacatccgatttcagagattatccagaatta
ctgaggcaagcgatatctttagcaagaaggatacaggatcctctattagagttttctcaa
ttgtgtaccgtagatgaagaaattatgtgccttaaatatcatcctttgcaagatcaatta
cttaaagaagatcttatagaaaatttatatttggagtttataaatcgtgtaaatgaagta
ggagtagatttaaatcgaacagttcaagagccttatacatcaaacttagtacaatttgtg
tgtggtttgggtgccagaaaggctcaatcgttgattaagattctaaagcaaactaatcag
agactagagaacagaacacaactagtaacagcttttcacatggggcccaaggtatttgtt
aactgtgcaggttttattaagatagacacaaatagtttaggagatagtaccgaggcatat
gtagaagttttggatggttcacgtgtacatcccgaaacgtacgaatgggcgagaaaaatg
gcagtagatgcactagagtatgacgatgaagatgcaaatcctgctggtgctttagaagaa
attcttgaatctccagaaagattaaaagatttagatctggatgcgttcgccgaagagctt
gaaagacaatgttttggaaacaagtgcattactctttacgatataagagctgaactgaat
tgtaggtacaaagatctccgtgtagcctatcaatccctaaatacagagaaattgtttgat
attttgacaaaagagactccggaaatgttctatgttggtaaattaatcctagcaacagtt
gttggaataagtcacagaaaaccgcaaggagatcagctggatcaagcaaatcctgttaga
aacgatgagactggtttatggcagtgtccgttttgtttgaagaacgatttcccagaattg
tcggaagtgtggaatcattttgatgctggtgcgtgtccggggaaagcaactggaatccgt
ttaagattggataatggaatctctggctacattcatgtcaaaaatttatctgataagcat
gtcaataatccagaggaaagagtacatgttggtcaagtaattcattgtcgtataacaaaa
atagaagtagaacgatttagtgtcgaatgtactagtaaaacgagtgaccttattgacaaa
aatcgtgaatggagacctcagaaggacgcttactatgacacagaagcagaggagaacgat
acaaagattgaagaagataccaaaaaagcgcaacaaagacagacttatgtaaaacgtgtt
ataattcatcccagttttcataacataagcttcgctgaagttgagaagttaatgcaaaca
gtgaaacaaggagaaacgataatacgtccaagcagtaaaggatccgatcatttgacagtg
acatggaaagtcacagaaaaaattcatcaacatattgacgtaagggaggagggcaaagaa
aacgtgttttctttaggtcgtagtctgtggattggcaatgaagaattcgaagatctggat
gaaattattgcaagacatattaatccaatggctgtctatgcttcagaacttttagatttt
aaatactacaaaccaaatgtggaaggccttaaagataaagcggaggaaatattgaaagaa
cagaaaaaacaaaatcctggaggaattccgtatattatatctgctgctaggaattatcct
ggaaaatttttactttcatatttaccgcgagttcgttgccgccacgagtatgttaccgtg
acaccggatggatttcgatacagaggtcaaatatttaatagagtgaacgacttgttccgt
tggtttaaagagcattttagagatcctatacctggtcaatctacacctggtacgccacat
ggaggtatgactaccagaacaccgtacattagtactccaggaattaatggagtgaattca
gacgcaatacaaaaagtagcccaaaatatgccacaccacatgttacattctctctcgaaa
gtagcaagccaaactccacataattatccgccatgcactccaggaactgccagtgttaat
aattatggaatttatggaagcacaccttacacgccttcaggccagactccatttatgact
ccatatcatactccacatcatacacctcaccatccacagacccccagtcataatcaagga
ccattcttgcaaccaataccacccgcaatgaattcaaatacgcatagagcttcaagatct
cacaggtctacttcgtccgactcaacgaattggacaaaggcggcggaagcttgggctcgt
gcaaaacaatctacttcgagaaactttaacattactccaagatacgatgacaatagaaga
acgccacggaatcaagaaactcaaaacgatagagcagttccacggaatagaactccctct
gttcgcactccatcttacaaatctcccaaagggactccatttacaaattctagtccacgg
agtatgtcgatcagcggcgacggtactcctttatacgatgaaaactggtga
DBGET
integrated database retrieval system
