Colletes gigas: 122397706
Help
Entry
122397706 CDS
T07492
Name
(RefSeq) uncharacterized protein LOC122397706
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cgig
Colletes gigas
Pathway
cgig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122397706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122397706
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122397706
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122397706
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122397706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
122397706
NCBI-ProteinID:
XP_043252988
LinkDB
All DBs
Position
Unknown
AA seq
1899 aa
AA seq
DB search
MMSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAN
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVAQPIVAPVKLPP
GDPVTPTEAAMREQVLKKQRELIELQKKKLELELLQAKANLEQQQRQLDKQAGNLKAELV
AATTHVTSGMETISQGKPVALNVPCQASKPVTKQFPAATASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRIKTTSAQDVPVPSVDPRQRISTSSQKDTRGEGQTQLAANTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATINASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNSSKGSQSLSVGSNSSLTLSASNRGGGSNDSKSKDTKG
SNSRSFSSSTIEKSSTSSKSSHRKIGNKSRSKQPQTSPNKIPKVDRDVSPVRSKSREKDS
GDSSPSSRTSPQSFQTSKNRKKNTKSRKRSPSPPYRIPRRNDTKSNSSLSSSGGVTEEEQ
SGSLIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPVNTGNAQASAEPTLESSSK
DEDLRATLPLPGATASVPEKKEDLDLRVLPPPVNPNKRQSSEHMESSLIKKTKAEKFDAL
FGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDS
RDRNRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRPGRRGRENDKPERNEDRNIEIIMK
QAAEQLNQGSITKAQYNILIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDMAGAGD
RASTFSPSSDKEVMRNKDHPIPRNPNGPRWQSQPWQQPGPWAHPPGPPYGPQGHFNSDFR
PVGPWQNPRHFGPIRPDYQYHGGFNHNLGPNPRLGPGIMGPMGPNGPLMSNLLPNGPIGP
MGMPNPPAISLPGMNGPGMMMNNGPISNLMSNPNIPPLSATRNVSPNSSSKYDLEEGDQN
YSTTMMKNQNPHSRELPPPDSKLLDEVARDTMKSINIDNIPREIRYYGQTGVVFMNWDDP
REIGFQNGIRRILIDDKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDRWYECYF
GGMPVTIDLGGKKVSVKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQI
FEIEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYV
KITGMRGEEPIESPPTPPLLTQKPKVDTTSAPTQFSSVESESTSQDGSDLRTTPKPDLQL
DMLSSVLPSAMAPASGLSYQAEPAENPPPAAPALSLPLNMNELFQRLVETGIVPNLSEQK
KHEEEEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLD
WHFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTADTEGVATE
DSPQEALQPSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEEKNYHPLCLDDY
KRALEKSALALEETIEEMEDEKKITDEMSAEENKTEELSVEALNLEIETIEAPDEIMKDN
AEEAVFDIENTDEAMVVDDNADIEQNEKEKEQELGTNSEETVDTDNLETEVALATIETEE
CETESVDKSFENIKIKEEPIDEPEEQLEEEQFDFTNVEIKEEPVEPEPDPEESVITEPAT
ADTTYAAVKSSIDGNVELDSTPAAIPTAPSRIKINITKTLCINKEPEESKEKPVSETLAE
EIAEPLVAASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaacaaagtctaaggagatagcagatgagtatatctcatcactgtcggatctg
accatcaatagcaaacctttgattaatatgctcaccatgttggcagaggacaacattgaa
catgcatcagcaattgttcaagctgttgagaatcatctgcaaaaggtgagaagcgacatc
aaattacctgttctttatttaattgactcaattgtaaagaatgtgaatggagcatacttg
aatctcttcacacaaaatattgttaacactttttgcggagtgtttgaaaaggtggatgag
aatacgcgagccagtatgtggaaactgagacaaacgtggaacgacgtgtttcctgcgaat
aagttattttcattggatgtacgggtgcaaagtattgatcctgcttggccgatcactgcc
tctcctactagcgtttcttctggatctatccacgtcaaccctcgatttttctcgatgccc
cagcaatctgcaacatcgatagtagcacaaccaattgtagcgcctgttaagttgcctcca
ggtgatcccgtaacaccgacagaagcagcaatgcgtgaacaggtattaaaaaagcaacgg
gagttgatagagttgcagaagaaaaagctcgagctagaactacttcaggctaaggcaaat
ttggagcagcaacaacggcaacttgataaacaggctggaaatttgaaagcagaattggtt
gcagcaacaacccacgttacatcaggcatggaaactatttcgcaaggaaaaccggtcgca
ctcaacgtgccgtgtcaagcgtcaaaaccagtaacaaaacagtttccagcagcaactgct
tcgcttctgaaaaatgcaggaacgaacaatggcccacgaatcgcaccggctagtagtata
gcagtagcatcggctaaacctgtgtcacgcgatccaagaataaagactacttcggctcaa
gatgtaccagtcccaagcgtggatcctcggcaacgaataagtacatcaagtcaaaaggat
acccggggtgaaggccaaacgcagctagcggcaaatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtaactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacgataaacgctagtaataacaataatgctaatacg
aacctcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaatagttccaaaggttctcaaagtctatctgtgggtagtaatagttctttaacg
ttatccgcgagcaacagaggaggtggtagtaacgattccaagtcgaaggacacgaagggc
tcgaattcacggagtttttcatcttcgacgatcgagaaatcttccacttcctcgaaatcc
tcgcatagaaagataggcaacaaatcgcgttctaagcaacctcagacatctccgaataag
ataccgaaagttgacagagacgtaagcccagttaggtccaaatctcgtgagaaagacagt
ggagacagttcgccatcctcgcgcacctctccccaatcctttcaaacctctaagaaccga
aagaagaacacgaaatcgagaaagcgtagtccaagccctccgtatagaatccccaggcgt
aacgatacaaagtccaattcaagtctaagtagttccggtggtgttactgaggaggagcag
tctggttcgttgatagtgtctcctcctcatccaccaacatttaaagaaattcgaccgaat
gctagacaaagaaattatgtaaggcgaaacaaggacggcagtctaagtcccgagcggtct
ccagtaaatactggaaacgctcaagcttctgcggagccgactttggaatcatccagcaaa
gacgaagacttgagagcaacgctacctcttccaggtgcaactgcttctgtaccggaaaag
aaagaagacttagatttgcgcgtattgccaccgccagttaatcccaacaaaagacaaagt
tcggaacacatggaatcatctttgatcaaaaaaacaaaggccgagaaatttgacgcatta
ttcggaaatgaagacgttgatctacgaacattgactcatcctaaagctggacgaccgccc
acgccacctccacctgtgatatcgggtgaagatggtaaagatggttgggcaaaattgaaa
acaccgtcaaagaatgacagagagaaacaggctaacaacactgacgacaaaagagacagt
agagatcgtaacagagacagattgggcaggctcaggctttacaataaacttccggatgat
ccgaaagaaagaagaaggacgctatcgaacgaggatcaagacaataggccagggcgaaga
ggtagagagaatgataagccggaacgaaacgaggatagaaatattgagataataatgaaa
caggccgccgagcaattgaaccaaggttcgatcaccaaagcgcaatacaatattcttata
caggaggttttacacatgagcgaagatcgcaaattgagagccgcgcaacggaaagagaag
gaagtaggttcgattgtttgggaaaaaggcgtgaatctggatatggctggtgcaggcgac
cgtgcatccaccttcagcccttcgagcgataaagaagtaatgagaaacaaagatcaccct
attccaagaaatccgaatggtccaagatggcaaagtcagccgtggcaacagccaggacca
tgggctcacccaccaggacctccttacggcccacaaggacacttcaattccgatttcagg
cctgtcggtccatggcaaaatccgagacactttggtcccatacgacccgactatcaatac
catggcggtttcaaccataatcttggtccaaatcctcgtctgggacctgggataatggga
cctatgggacccaatggaccacttatgtcgaaccttttaccaaatggcccgatcggtcca
atgggtatgcctaatccaccggctatatcgttaccaggaatgaacggacctggaatgatg
atgaacaatggaccaatatcgaatcttatgtcaaatccgaatatacctccgttgagcgca
acgagaaacgtatcgccgaattcatcctctaaatacgatcttgaagaaggcgatcagaat
tactctacgacgatgatgaaaaatcaaaatcctcatagccgtgaattaccgcctccggac
tcgaaattgttggacgaagtcgcgagggatacgatgaaatctataaacattgataatata
ccgcgtgaaattagatattatggacaaactggtgtagtttttatgaactgggacgatcct
agagaaattggattccagaacggtataagacgaattttaatcgatgacaaagacactatc
acttgtgcatttaacgatcaatacaaagaatttatgtacgaaggtgaagttcatagaatt
aaattaggagcacccacgagagaattgtacgtcgacgaccggtggtatgaatgttatttc
ggcggtatgcccgtaacgatagatcttggcggtaaaaaggttagcgtcaagttggaagga
ccaccgcctcaagtaaagatcggtaccgtaaagagaacagacttggtagttgccaaaatt
aatcttattattaacgcccgaaatatggtccccgtctttctggatgcgaaaccgcaaata
tttgaaatcgaaggaaagccacatacacttgagtttatagactcgttgcaaacagttcta
ttgaacggacgtccgtttaaagtcgagtttggaggattgccaaaacctattattgttagg
gataagaaacattttatacgattttcggtattgccaagaggagttcgtccgggttacgtt
aagattacaggtatgagaggcgaggaaccgatcgagtcaccacccacaccgcctctctta
acgcagaaaccgaaagtagatacaacctctgcgccaacgcaattctcatcggtcgagtcg
gagtcaacgtcgcaagatggttctgatcttagaacgactcccaaaccggatctgcaatta
gacatgttatcttcggttttaccatccgcgatggcgccggcgtccggattgtcgtatcaa
gccgaaccggcggaaaatccgccaccggctgctccagcattatccttaccactgaatatg
aacgagctattccagcgattagtcgaaaccggtatcgtaccgaatctgtcggaacaaaag
aaacacgaggaagaagaaaagaaagagccagaaattattcccgtttcgttcgataaacca
gagacactcaaagtcaaacaaccggctatcgcggcagcattgtacagtggtatgcagtgt
agttcctgtggtgctagatttgcacccgaattggcaactcggtacagccatcatttggac
tggcatttcagacagaacaggcgagaaagagattccgcacggaaagctcattctcgacct
tggtattacgacgttagcgattggatacagttcgaagaaatcgaagatctggaagacaga
gcacaaagttggttcgaaacggagaaacaaacggcggacacggagggtgtcgctacggag
gattctcctcaagaagcattgcaacctagtgttcctactggatctgacgaagattccaga
tgtcaagtgtgccacgatgcatttgaacaattttacaatgaagagaaagaggagtggcat
ttaagaccagcgattaatttcgaggaaaagaattaccatccgctgtgtctcgatgactac
aagagagctttggaaaaatctgcgttagcgctcgaggaaacgatcgaggaaatggaggat
gaaaagaagatcaccgatgaaatgtctgcagaagaaaataagactgaggaattaagcgta
gaggcgttaaatcttgaaatagagacgatagaagcgcccgatgagataatgaaagataac
gcggaggaagcagtttttgacatagaaaatacagacgaagctatggttgtagatgataat
gcagatatcgaacaaaacgagaaagagaaagaacaagaattaggaaccaacagcgaggaa
actgtcgacactgataatctcgaaacagaagttgcactcgcgacaattgaaacagaagag
tgcgaaacagaaagtgtcgataaatctttcgaaaatattaaaatcaaagaagagccaatc
gatgagcccgaagaacaactagaagaagaacaattcgattttaccaatgtagaaattaaa
gaagaacctgtagaaccggaaccagaccccgaggagagcgtaattaccgaacctgcaacg
gctgatacgacgtacgctgctgtgaaaagttccattgatggaaatgtagaattagattcc
acgcctgcagcgattccaacagctccgtcccgaattaagattaatattacgaaaacattg
tgtataaataaggaaccagaagaatcaaaggaaaaacctgtatccgagacactcgccgaa
gaaatagcagaacctttggtggctgcgtctataaaacctgctttgcaaggtagaaaattg
tctaatttaccccctgtggagagagggcaagaattatcaggtctttgctcgattatgtaa
DBGET
integrated database retrieval system
