Colletes gigas: 122397772
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Entry
122397772 CDS
T07492
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cgig
Colletes gigas
Pathway
cgig03022
Basal transcription factors
cgig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122397772
09124 Replication and repair
03420 Nucleotide excision repair
122397772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgig03021
]
122397772
03400 DNA repair and recombination proteins [BR:
cgig03400
]
122397772
Transcription machinery [BR:
cgig03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122397772
DNA repair and recombination proteins [BR:
cgig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122397772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Voldacs
Motif
Other DBs
NCBI-GeneID:
122397772
NCBI-ProteinID:
XP_043253098
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGSSSTFHFVNRNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRM
LQENPVLLQLYRDLVITQVISSEEFWSQHAAEYTQAKKSQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTIDIIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQSGINDPLVDITSFEDQTLDENYGNGPSKSDKVSGNIVHQSM
IKRFNQHSIMVLKASTAKQSAQPQLNGSTPSASKITTLCHQLDEEPKTKKLRIQEKLIYD
DLDSSCDTNTNNSAPLNLTHVDRYLHGPVPGYGNTEPSSEELLVTLNQLKKEATSWLSGN
SIPRQLATSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKELRNVYVCMCEL
LRHFWRSFPPTTPQLEEKAIRMHEALHRFHSAKLKPFEDRVQRDFSAVSQHLTSHLNQLL
NTAYRKFAVWQQRKMQMR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatcatcggaagatgttctaatgcaagtaggacaagtccgttataaaaaagga
gatggcactttatatgtcatgaacgaacgaatagcttggatgcttgataatagagatact
gtatctgtcagtcacaaatatgcagacattaaattgcaaaagatatcaccagagggaaag
tcaaaaatacagctgcaagttgtgttgcacgatggttcatcgtctacatttcactttgtg
aacagaaatggacaagaggcacaaattaaggatcgtgatgatgtaaaagaattacttcaa
caattattaccaaaatttaagaggaaagtaaacaaagaattagaagagaaaaatagaatg
ctccaggaaaatccagtactgcttcaattatacagagatttagttattacacaagttatt
tcgtccgaagagttctggtcgcaacatgctgcagaatatactcaagctaaaaagagtcag
cgtcaagaaataggtgtcaatagtgcttttttggctgacataaagccacaaactgatgga
tgtaacggattgaaatataatttaactattgacataatagaatgtatatttaagacttac
ccagcagtaaaaagaaaacatcaagaaaatgtgcctcataaaatgtctgaatccgatttt
tggacaaagttcttccagtcacattattttcatcgagatcgtatcaatgcagggaccaag
gatctttttaccgaatgtgccaaaatagatgatcaagaattgaagaaagatattcagtct
ggtatcaatgatccattggtagacataacttcctttgaggatcaaactttagatgagaat
tacggaaatggacctagcaaatcggacaaagtatcaggaaatattgtacatcaaagtatg
ataaagagatttaatcaacacagcattatggttttaaaagccagcactgccaaacaatct
gcgcaaccacaattaaatggttcaactccgtcagcaagtaaaattacaacactctgtcat
cagttggatgaagaaccaaagacaaaaaaacttagaatacaagaaaaattaatttacgac
gatcttgatagtagctgtgacacaaacacaaataatagcgcgccgttaaatttgacgcat
gtagatagatatttacatggtcctgtaccaggatatggtaatacagagccttcatctgaa
gagcttcttgtgacattaaatcaattaaagaaagaagcaactagttggctgtcaggaaac
agtataccgagacaattagcaacgtcattagttagtccagctgcagcagtttcagcttta
ggagaattaactccaggcggctctttaatgaaaggttttagagaagaaagtcttggccaa
ttaataccaaaggatttagaaaaagagttgcggaacgtttatgtgtgtatgtgtgaactt
ctaaggcacttttggcgcagttttccacctacaactccacagcttgaagaaaaagcaatt
agaatgcacgaagccttacacagatttcattctgctaaacttaaaccctttgaagatcgt
gttcaacgagacttttctgcggttagtcaacatctaacaagtcatttaaatcaattacta
aacacagcatatagaaagttcgcagtttggcaacaacgtaaaatgcaaatgaggtag
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