Colletes gigas: 122398104
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Entry
122398104 CDS
T07492
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122398104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgig03041
]
122398104
Spliceosome [BR:
cgig03041
]
Complex C
Other components
Step II factors
122398104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_EIPR1
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_NWD2_C
PQQ_2
Motif
Other DBs
NCBI-GeneID:
122398104
NCBI-ProteinID:
XP_043253638
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MLALKDYGSSDENSEAESDNENAKSEVNCNSDTNEVSTVESPPVGKLTMAVSMQICSAPE
VVPTGTELCVRHIDSTTDEVMHNPKFEELFAPDIGPENPFKTQQQRAAKNMLSGYVEKAH
ISEFQFENQRRTFASYGYALDPTVDGSAEEGRTIIGAKEAAEECGAKTVFESTMLRPLDK
RKRCRNNDPADIEGFLGPWGGYVDEKRVIKPTDEEAAELEEILAKRNRRGKPTEEKPLEE
KTVLHIKDSVDYQGRSFLHAPQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWY
PRTAHLLLSCGMDCRVKLWEVYKERRCIRTYYGHRQAVRDISFDNDGKRFLSAGYDRYVK
LWDTETGACISRFTSRKIPYCVKFNPDPDKQHLFVAGTSDKKIICWDVRSGEITQEYDRH
LGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDMKYIADPSMHSMPAVTPSPNQKWLA
CQSMDNKIVIFSALNRFKMNRKKTFTGHMVAGYACGLDFSPDMSYLVSGDADGKCYIWDW
KTTKLYKKWKAHDGVCIDVLWHPHEPSRLATAGWDGKIKYWD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctttgaaagattacggtagcagcgacgaaaacagcgaggcagaaagtgataac
gagaatgcgaaaagcgaggttaattgtaactcggatactaacgaagtatcaactgttgaa
tcccctcccgtaggaaaattaaccatggcagttagtatgcagatttgctctgcgcctgaa
gtagtaccaacgggaaccgaattatgcgtgaggcatatagattcaaccacggatgaagtc
atgcacaaccctaagtttgaagaactttttgccccagacattggaccagagaatcctttt
aagacacagcagcaacgcgcagcgaaaaatatgctctctggatatgtagaaaaagctcat
ataagtgaatttcaatttgaaaatcaaagaagaacttttgctagttatggctatgcactg
gatccgactgtggatggtagtgcagaagagggtagaacaattattggagcaaaggaagca
gcagaagagtgtggtgccaagactgtttttgaaagtacaatgttaagacctttagataag
agaaaacgatgtagaaacaatgatccagcagatattgaaggatttctaggtccatgggga
ggatatgtggatgaaaaacgagttataaaaccaacagatgaagaagctgctgaactggaa
gagatactagccaaaagaaacagaaggggtaaaccaactgaagagaaacctcttgaagaa
aagacagtgctgcatattaaagatagtgtggattatcaaggaagatcgtttttacacgcg
cctcaggatgttggcgtaaatttgagatccgagtcacctccggataggtgcttcctacct
aaagcgcaaattcacacttgggagggccacaccaaagggatttctcaaattagatggtac
ccgcgcacggcacatttattactttcatgtggtatggattgcagagtgaagttatgggaa
gtttataaagagagaagatgtattcggacttattacggtcaccgtcaagctgtgagggat
ataagcttcgacaacgacgggaagagatttttgtcggcgggatacgatcgttacgtgaag
ttatgggatacggagactggggcttgtataagtcgatttacaagcagaaaaattccatat
tgcgtgaaatttaatccagacccggacaaacaacatttgttcgtggcgggtaccagcgat
aaaaagattatttgctgggacgttcgttccggcgaaataacgcaagaatatgataggcat
ttgggagcagtgaacacgataacgttcgtggatgaaaatcgacgatttgttacaacctcg
gacgataaaagtttacgagtttgggaatgggatataccagtcgacatgaagtacatagcc
gatccctctatgcattccatgccagcagtcacgccttctccaaatcaaaaatggctcgcg
tgccaaagtatggacaataaaatcgtcatattttctgcgttaaacaggttcaaaatgaac
cgtaaaaagacgttcacgggtcacatggttgctggttacgcgtgcggattagatttctca
cctgatatgagctacctcgtatcgggagacgcggacgggaaatgttacatttgggactgg
aaaaccacaaagttgtacaaaaagtggaaagctcacgatggcgtgtgcattgatgtactg
tggcacccacatgagccctcgaggctcgcaacagccgggtgggatggaaaaataaagtat
tgggattga
DBGET
integrated database retrieval system
