Colletes gigas: 122398212
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Entry
122398212 CDS
T07492
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122398212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122398212
03012 Translation factors [BR:
cgig03012
]
122398212
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122398212
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122398212
Translation factors [BR:
cgig03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122398212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
HA2_C
HA2_N
AAA_22
nSTAND3
ResIII
AAA_19
PhoH
ATPase
AAA_14
NPHP3_N
NB-ARC
ABC_tran
NACHT
RsgA_GTPase
TsaE
AAA_24
AAA_7
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
122398212
NCBI-ProteinID:
XP_043253836
LinkDB
All DBs
Position
Unknown
AA seq
977 aa
AA seq
DB search
MSHPYRARGSYSRRNKYGDGVESSQSGSSHFEQHGHARGRGQGHPPWLKGKEIGLYYKNK
SKVKRVQKQTRVIKLPLNIQQKIEYVLGNSTGFYDKLYDNEASAEDINSKIENKYTHIHD
SHFKRKFLNIVSGNIQENLAKALFVEPSIKKDSDLDDRLLKEYELKASLEEYERMMKFRL
KLPTYHKKSEILQLIKENQVVVISGETGCGKTTQIAQFILDDQIEDGNGSTTRIICTQPR
RISAISVAERVAAERGEKLGKSVGFQIRLEKVLPRDRGSILFCTTAMLLQFMQSDPALKN
YSHIILDEIHERSIQSDFIIALLKLIIPKRPDLKVLLMSATLNSERFSKYYNDCPMIHIP
GFTYPVETFYLEDVLSVTQFKFPEPPAMPQNFRKYTKKYKNVQHTMDEFSEIINPYARQL
IADKKYPKHVTDQLKNPNSEKISYELIEELIDHISRTKDPGAILVFLPGMMDIIKLHRLM
LDSGRYPQSKYVIYPLHSRMPTVDQRLIFKEPPAGVRKIIIATSIAETSITIEDVVYVID
CGRTKFSKFDLNKNIQTLLPEWVSLANAKQRRGRAGRVKPGYCYHLYSKAREMTFDQYPL
PEMLRTRLEEVILQIKILQLGKAKSFLASVMDPPNLKTIDLSLDLLGILNALDNDENLTP
LGYHLAQLPLDPRTGKMIIWASLFSCVEPVFAIVASLTFKDAFYSPLGNEDQAKQKKLEL
TLNQYSDHVALAEALKRFEAAYKRGNASYFCRKYFLSLNTLKLLSEMKTQFAQYLHEMKF
LESDNPSERNANRNSDNIALIKAIVSAGLYPNVAIMRRITKMGTSLWTPEDGNVYMHPSS
VNDKVELPSPYITYYVKQKSSSIYLHDTTCVTGPILLFAAPHMCIKKEKGNYLISLTSSQ
NFACDLKTAQLIQKLQEEFNNMLEYKITHPGTVSWSSHEGDLLNVIIDFVCQKDEEMGFS
ESDVKDEKDDFYEHSET
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatccttacagagcacggggatcgtattcccggcggaacaaatacggagatgga
gttgaaagttctcaatctggaagctcacattttgaacagcatggccatgcaagaggcagg
ggtcaagggcatcccccttggctaaaaggcaaagaaatagggctctattacaaaaataaa
tctaaagtgaaacgtgtacaaaaacaaacacgtgttattaaattaccattgaatattcaa
cagaaaattgaatacgtgttaggaaactctacaggtttttatgataaattgtatgacaat
gaagcatcagctgaagatatcaatagcaaaattgaaaacaaatatacacatattcatgat
tcacacttcaagagaaagtttctaaacatagtatctggtaacatacaggaaaatctagct
aaagctttatttgttgaacccagtataaagaaggatagtgatttagatgacagattacta
aaggaatatgaattaaaagcatccttggaagagtatgaacgtatgatgaaatttcgttta
aaactgccaacatatcacaagaaatcagagattttacaattgatcaaagaaaatcaagtt
gttgtaataagtggagagactggctgtggaaaaacaacacagattgcccagtttatactt
gatgatcaaattgaagatggtaatggcagcactacacgaattatttgtactcagcctaga
aggatatctgcaatatctgttgctgaaagagttgctgctgaaagaggagaaaagcttgga
aaatctgttgggtttcaaattagacttgaaaaagtcctacccagagatagaggaagtata
ttattctgtactactgctatgctattgcaattcatgcaaagtgatccagctttaaaaaat
tattctcatataatattagatgaaattcacgaacgctcaatacaaagtgactttattatt
gctctgttgaaactaattattcctaaaagaccagatttaaaagtccttctcatgagtgca
acacttaattctgaaagattttcaaaatattataatgattgtcccatgattcatatacca
ggctttacttacccagtggaaacgttttatttagaagatgttttatcagttacacaattt
aagtttcctgaaccacctgcaatgccacaaaatttcaggaaatataccaagaagtataaa
aatgttcaacatacaatggacgagttttccgaaatcataaatccatacgcacggcaactt
atagctgataaaaagtatccaaaacatgtgaccgatcaactgaagaatcctaatagcgaa
aaaatatcttatgaacttatagaagagttgattgatcacatttctagaacaaaagatcct
ggagcaattttagtttttttgcctggtatgatggacataataaaattacacagactaatg
ttggatagcggacgatatccgcaaagcaaatacgtaatttatcctcttcactctcgtatg
ccaacggtcgatcaaaggcttatatttaaagaaccgccagcaggagttcgaaaaataatc
attgctacttctattgcggagacttccataactattgaagacgtagtatacgtcattgac
tgtggcagaacgaagttttctaaatttgatttgaataagaatattcaaactctgttaccc
gaatgggtatcgttagctaatgctaaacaaagaagaggtcgagcgggcagagtaaaacct
ggttattgctatcatctatattcgaaagctagagaaatgacgttcgatcaatatccatta
cctgagatgttaagaactcgtttagaagaagtaattttgcaaataaaaattttgcaatta
ggaaaggccaaatcttttctagccagcgttatggacccgccaaatttaaaaactatagac
ttatctttggatctactaggaatacttaatgcattagataacgacgaaaacctgactcct
ttaggatatcatttagcacaattgccgcttgatccacgtacaggaaaaatgattatatgg
gcatcattgttttcatgcgtggagccagttttcgcgattgtagcaagtcttacattcaaa
gacgcattctattctcctctaggaaacgaggatcaagcaaagcaaaagaaacttgaactt
actttgaatcaatacagtgatcacgttgcactggccgaagctttgaagagattcgaggct
gcgtacaaaaggggaaatgcttcttatttttgcagaaagtattttctctctttaaataca
ctcaaacttctttccgaaatgaaaactcaatttgctcagtatttgcacgaaatgaaattt
ttggaaagtgacaatccaagtgagaggaacgctaataggaattctgacaatattgcgtta
ataaaagcaatagtatctgctggactatacccaaatgttgccatcatgaggagaattaca
aaaatgggaacatctttgtggactccagaagatggtaacgtttacatgcatccgtcgagt
gtaaacgataaagtggaacttcctagtccgtatattacatattatgtaaaacaaaaatcg
tcgtcgatatatttacatgacaccacatgtgtgactggaccaattttattattcgcggct
ccccatatgtgtataaaaaaagaaaaaggaaattatttgattagtttaacaagttctcaa
aattttgcgtgtgatttaaaaaccgcacaactcattcagaaattacaagaagaatttaac
aatatgttagagtataaaataacgcatccaggaacagtatcttggagtagccatgaaggt
gacctactaaatgtgattatagattttgtctgccaaaaagatgaggaaatgggattttcc
gagtctgatgtcaaagatgagaaagatgatttttatgaacacagcgaaacataa
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