Colletes gigas: 122398333
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Entry
122398333 CDS
T07492
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cgig
Colletes gigas
Pathway
cgig03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122398333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122398333
03009 Ribosome biogenesis [BR:
cgig03009
]
122398333
03036 Chromosome and associated proteins [BR:
cgig03036
]
122398333
Enzymes [BR:
cgig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
122398333
Messenger RNA biogenesis [BR:
cgig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
122398333
Ribosome biogenesis [BR:
cgig03009
]
Eukaryotic type
90S particles
RNase
122398333
Prokaryotic type
rRNA processing factors
122398333
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
122398333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
122398333
NCBI-ProteinID:
XP_043254016
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MANPPNAGQSYFWSSEVSQPQNMGYYSVPPPSFPPPNFRQPPPSYNVPVSTIPENKATNF
GSSYHSVATCYQSGVPNSYSDVSYQNQIDTQYGNQNFGLSGYSQPVAGNFNSNWDSRNTY
QNSTSPEWISNNYSSDWNKYQSDKNSWNESNKVQEDGGKSICNKYNEFTSSRKSEWRYRD
KESSSSRTVSSKRSRSPECRSRSSRSPHRSRYDSQRDRPSKYHKNSSSSRERSHNEESSD
RRSSYRRNNSYVPRSQRSFTSHRSRKRSRSQESYSTKASSPSNSSSSKRDLTERELLLEK
YRQDYCATSKDMERKMDELSAMGPEGIMENARKVWTRTAPADLYYSRDESNSKVMRGTLK
LYELCELFKKVLIDRATAARALQPPYEPPPRKTRARLCRHKSEVCSSSSSDSDSSMDEDD
RTMEELMAKKQHPQRLHPEMWFNDPGEMNDGPLCRCSAKSRRSGIRHGIYAGEGAINKCN
LNSNNADKLCHYRITISPPTNFLTKTPTIIKHDEHEFIFEGFSMLSHFPLVKLPTCKVIR
FNIEYTILYIDEKLPENFTIQELDCFQTYLFKEILELVDFDLQAAQDKSGCGQFHFMPRF
VRDLADNGQEILSMNEVLNYLIKSSKLLIDPDDLPRLVEMPQYKWQNFADEVKGMIVTYP
GKKPCSVRVDQLDRSQTDQPSGAIAHPEIVHFGIRPPQLSYAGNADYQKAWRDYVKFRHL
LANMPKPSFEDKRRLEAKENKLQELRTQSKMKRDVTVDVSSEGFYRTGIMCDIVQHAMLI
PVLVCHLRFHKSLDNLERTLGYRFKNRYLLQLALTHPSYRENFGTNPDHARNSLTNCGIR
QPEYGDRRIHYMNTRKRGINTLINIMSRFGARTETESSIAHNERLEFLGDAVVEFLTSIH
LFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANC
FEALMGSLFLDGGIEVADRVFGETLFKDEEDLSKVWVNYPKHPLQEQEPTGDRQWIPSFE
LLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYL
YKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELKTKDRADLLEAFL
GALYVDKGLEYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVY
KVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKSQDLFPQLDHQKR
VIAKSMKMQQWPNKHKTRGKSMKPTDRHDDSDCSQRSKRSRSEA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcctccaaatgctggccaatcttatttctggagttcggaagtttctcagcca
caaaacatgggatattattccgtgccaccgccaagttttccgccaccaaattttagacaa
ccaccgccgtcctacaatgtgccagtgtccactattccagaaaataaagccaccaatttc
ggttcatcctatcattcggtggcaacttgttaccaaagtggagttccaaattcttattcc
gatgtttcttatcagaatcaaatagacacgcagtacggtaatcaaaattttggactctcc
ggttattctcaaccggtggctggaaattttaattcaaattgggacagcaggaacacctat
caaaatagtactagccccgaatggatttccaacaattactcctccgattggaacaaatat
caaagtgataaaaattcttggaacgaatcgaacaaagtacaagaagatggcgggaagtct
atatgcaataaatacaatgaatttacgagtagtagaaaatccgaatggagatacagggac
aaagaatcttccagtagtcgtacagttagtagcaaacgatctaggagtcctgaatgtaga
tccagatctagtagatcgcctcatcggtccagatatgactctcaaagagacagaccttct
aaataccacaaaaatagttcaagctctagagaacgttcgcacaatgaagaaagttcggat
agaagatcgtcttacaggagaaacaattcctacgtaccacgttctcaaagatcatttacg
agtcacagaagtaggaaaaggtcaagatctcaagaatcttactctactaaagccagtagc
ccgagtaatagttcctctagtaagagggatttaacggagagggaattacttctagaaaaa
tataggcaagattattgcgcgactagcaaagatatggaaaggaaaatggatgagttatct
gctatggggcctgaaggtattatggaaaatgcaaggaaagtctggacgcgtacagcgccg
gcagatttgtattatagtagagatgaaagtaattcgaaagtaatgagaggcacgcttaaa
ttgtacgaattgtgcgaattatttaagaaagtattaattgatagagccacggctgcaaga
gctttgcagcctccttacgagccacctccgcggaagactagagctcgtctatgcagacac
aaatcggaagtgtgtagcagctcttcttccgacagcgatagctcgatggacgaggacgac
agaacaatggaagaattaatggcaaagaagcagcatccgcaaagattgcatcctgaaatg
tggttcaatgatcctggagaaatgaacgatggaccgttatgcaggtgtagcgcgaaatca
agaagatctggaattagacacggaatttatgccggagaaggtgcaataaataaatgcaat
ttaaattcgaataacgctgataaattatgtcattatcggattaccattagtccaccaacg
aattttcttaccaaaacaccgacaattatcaagcacgacgaacacgaatttatatttgag
ggattctctatgctctcccattttcctctagtaaaattgccgacttgcaaagtgattaga
tttaatatagagtatacaattctttatatagacgaaaaactgccagaaaatttcaccatc
caggaactggattgttttcaaacatacttgttcaaggaaatattggaactcgtagatttc
gatttacaagcggcgcaagataaatccggctgcggacagttccattttatgccaagattc
gtacgcgacttagccgacaatggacaagaaatcttatcgatgaacgaggttttaaattat
ttaataaaaagtagtaaactgttaatagatccagatgatctacctaggttagtagaaatg
ccgcaatataagtggcaaaatttcgccgatgaggtgaagggcatgatcgttacatatccg
gggaaaaagccgtgtagcgttcgtgtcgatcaattggatagaagccaaaccgatcaaccg
tccggtgcaattgctcatcccgagattgtacattttggaattagaccgccgcagcttagt
tatgcaggaaacgcagactatcagaaagcatggagggactatgtgaaatttcgtcatcta
ttagcaaacatgccgaaaccttcgtttgaagataagagaaggctagaagcgaaagagaac
aagctccaagaattaagaactcagagtaaaatgaagcgtgacgttaccgtggatgttagt
tccgaaggattttatagaaccggaataatgtgcgatatagtgcagcatgccatgttaatc
cctgtacttgtttgccaccttagatttcataagtccttggacaatttagaacgtacattg
ggataccgatttaagaacagatacctccttcaattagcgttaacgcatcccagttaccgt
gaaaattttggcacaaatccggaccacgcgcggaattctttgaccaattgcgggataagg
caacccgagtacggggaccgacgaattcattatatgaatacacggaaacgtggtatcaat
acgttgatcaatataatgtcaagattcggggcgagaacggaaactgagtcttcgatagcg
cacaatgaaagattggagttcttgggggacgcggtggtcgagtttctcacatcgatccat
ctgttccatatgttccccgatttggaggaaggtggtttggctacttacagagcagcgatt
gttcaaaaccagcatcttgccgtattagcgaaaaaattaaacttggaagagtacatgctg
tatgcgcatggtagcgatctatgtcatgatttggaattgagacacgcgatggcgaattgt
ttcgaagcgttgatggggtccctgtttcttgacggaggtatagaagtcgccgatagagtg
ttcggagaaacgctttttaaggacgaggaagatctttcaaaagtttgggtaaattatcct
aaacatcctctgcaagagcaggaaccaacaggcgacaggcaatggataccaagctttgaa
ctcttgcaaaaattaacaaagttcgaagaatccattggtatagaattcacccacatacgt
cttctagcaagagcatttaccgatcgcagtataggatacacgaacctaacgttgggttct
aatcaacgattagaatttttaggagacaccgtattacaactcatagtttccgaatatttg
tacaaatattttccagaacatcacgaggggcatttatctcttttacgaagttctcttgta
aataataaaacacaagcagtcgtgtgcgatgatttagggatgactcagtatgcgctctac
ggtaatccaaaggctgaactgaaaacaaaagacagagcagatttgctggaagcattttta
ggagctctttacgtcgacaagggcttggaatattgtcacgttttctgcgacgtatgtttc
ttcccgcgtttacaagacttcattatgaatcaagactggaacgatccaaaaagtaaatta
caacagtgttgtctgacgttaagaacaatggatggcggagagcctgatattcctgtgtac
aaagtgatcgagtgtaaagggccaacgaatacaagagtgtacaccgttgctgtgtatttc
caagggaaaagattagcaaaagcttcgggtcatagtattcaagaagcagaaatgaactcg
gctaaagaagctttagaaaaatctcaagatttgtttccgcaattagaccatcaaaaacgc
gtaatagcgaagagcatgaaaatgcaacaatggccgaacaaacacaagacgcggggaaag
tctatgaaacctacggatagacacgacgattccgattgcagtcaacgttctaaaagaagt
cgaagcgaggcatag
DBGET
integrated database retrieval system
