Colletes gigas: 122398345
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Entry
122398345 CDS
T07492
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cgig
Colletes gigas
Pathway
cgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122398345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122398345
03041 Spliceosome [BR:
cgig03041
]
122398345
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122398345
Spliceosome [BR:
cgig03041
]
Complex B
Other components
Prp19-related factors
122398345
Complex C
122398345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
TPR_10
ARM_TT21_C
PPR
DHR-2_Lobe_A
SNAP
ARM_TT21_4th
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
122398345
NCBI-ProteinID:
XP_043254043
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MMLERKDQEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALK
ELPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTE
QCYITRTRQIFDRALRALPITQHHRVWPLYIEFLKQNNVYETAVRVFRRYLKLAPEDTEE
YIEYLISIERLDEAAMKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDA
IIRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF
EELSLSKRMEDAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKR
VMLYEGQPHEIINTYTEAVQTVQPHLAVGKLHTLWVAFGKFYEENGQITDARVVFEKATH
VPYTKVDDLASVWCEWAEMEIRHGNYKDALKLMHRATAMPFRKVAYHDETETVQMRLYKS
LKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLE
EEHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEEN
TREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREM
LRIKRSVQAMYNTQVNMMSAQMLNNASNPPSDVPVDAMHLLDSKTPSTDNVAAYKDSIKF
VRGVTEGDGKSESQVNNPDEIDIDIDDVNDNEADVEEDIPIEKQTIPSQVFGSLKATEGE
DD
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatgctggaacgcaaagatcaggaagggaatttatacgttttcaatgaggaagattta
ccatatgaagaagaaatcttgagaaatccgtattctgtaaaacattggcaacgttatata
gatcatttaaaaagcacaaagagtagtaacttaaacattgtgtatgaacgagctttaaag
gaacttcctggcagttacaaattatggtacaattatttacgtcaacgtgtaaatcagtta
aaaggacgatgtataacagatcccctttacgaagatgtaaataatgcatttgaacgtgcc
ctagtttttatgcataaaatgcctcggatttggatggattactgcacattaatgacagaa
caatgttacataactcgtactcgacaaatttttgatcgggcacttagagcccttccgatt
acacagcatcatcgtgtatggccattatacattgaatttttaaagcaaaacaatgtatat
gaaactgctgtcagagttttcaggagatatctcaagttagctccagaagatacagaagaa
tacatagaatacctcatatcgatcgagagactcgacgaagcagccatgaaactcgcgcaa
attgttaatcaagatgactttgtatcaaaacacgggaaatcaaatcatcaattgtggaat
gaattatgcgatttgatatcaaaaaatccttccaaaataaaatctcttaatgtagatgct
attatcagaggcggtttaagacgttacactgatcagttaggtccactttggaattctttg
gcagattactatgttcgcagcggtttatttgaaagggcaagagatatttacgaagaagca
atacaaacagtgacaacagttagggattttactcaagtttttgatgcttatgcacagttt
gaggaacttagtcttagtaaacgcatggaggatgctgcgaaaaatcctaccgaagatgat
gacatagatttagaattgagattagcacgatttgaacatctgatggaaagacgattatta
ttacttaattctgtattacttagacaaaacccacacaatgtacaagagtggcataaaaga
gttatgctttatgaaggacaacctcacgaaattattaatacatatacagaagctgtacaa
actgtgcaaccacatttagcagtaggcaaattgcacactttatgggttgcgtttggcaaa
ttttatgaagagaatggtcaaataacagatgctagagtggtttttgaaaaagcaactcat
gttccatataccaaagtagacgatctcgcttctgtatggtgcgaatgggctgaaatggaa
attagacacggaaattataaagatgctttgaaacttatgcatcgcgctacggctatgcca
ttccgcaaagtagcttatcacgatgaaacagaaactgttcaaatgagattatataaatca
ttgaaagtctggtctatgtatgcggatttggaagaaagttttggtacatttaagacatgc
aaagcagtatatgataaaattatagatttaaaaatcgcaacaccgcaaatcattattaat
tacggtctctttttagaagaaaataaatattttgaagaagccttcagagcgtatgagaaa
ggaattgcattatttaaatggcctaatgtttacgatatatggaacacgtatcttacgaaa
ttcttaaaacgttacggtggtacaaaattggaacgaacgcgagatttgtttgaacagtgc
ttagaacattgcccacctaaatacgctaaagctttgtatttattgtatgcaaaattagaa
gaagaacatggcttggctagacatgcaatgtctgtgtacgagcgagcaacaagcgccgtt
cttcccgaagaaagatttgagatgttcaacatatacataaagaaagcagcagacatatac
ggtgttccgaaaacgcgacaaatatatgaaaaggctatagaagttctaaacgaagaaaat
acaagagaaatgtgtttgcgatttgctgagatggaaacgaaattaggagaagttgacaga
gcgcgggcgatatatgcacattgcagtcaaatttgcgacccaagagtaacatcgaatttc
tggcaaatatggaaagaatttgaagtgagacacggcaacgaggatacaatgcgtgaaatg
cttcgaataaaacgcagcgttcaagctatgtacaatactcaagtaaatatgatgtctgct
caaatgttaaacaatgcatcaaacccaccgtcagacgtaccagtggatgcaatgcatctt
ttggatagtaaaacaccaagtacagacaacgttgccgcgtacaaggatagtataaaattt
gttcgcggcgtgacagaaggagatggaaaatcggaatcacaagtgaataatccggatgag
atagatattgacatagatgatgttaatgacaacgaagcggacgtggaggaagatataccc
attgaaaaacaaactattccatcgcaagtattcggtagtttaaaagcaactgagggcgaa
gacgattaa
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