Colletes gigas: 122398843
Help
Entry
122398843 CDS
T07492
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122398843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122398843
Enzymes [BR:
cgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122398843
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122398843
mRNA degradation factors
3'-5' decay
Ski complex
122398843
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
RSC4_Ig_like
DUF3067
DUF3784
Chp1_domII
Motif
Other DBs
NCBI-GeneID:
122398843
NCBI-ProteinID:
XP_043255011
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MDVEDNTDTELRFISPSLLSDSQTVLREYIMCVDNLPIYHLDNAQCYWPRKPDILSLLDF
DLASPSTMLKFERDPVTGELGEMCEVPVTSAGENARNSMSMTRAPGPATDNIRGNASNIP
FWPGGFDEPEMVQNLTMEDIDFENNLRTLAKGFTAGIEFKSDNCTPKEATTQEEQLLESE
KNEIEKIAEKINLMAIVNDERNVLDIWSSGKDTKKEKETTKPSDIQESSFDEIVPFLDKS
DIPVLKISDKPAENAKSEWAEQLDVSIPINDFDKHIPDPAMCFPYELDTFQKQAILKLEE
NCNVFVAAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKKKFDSVGLLT
GDLQINSNASCLIMTTEILQSMLYCAADVLRDLEFVIFDEVHYINNDERGHVWEESVILL
PKTVNIVMLSATVPNPLVFADWVGRTKKKKMFVISTLKRPVPLQHYLYTGTNGKTRHDRF
LVLNEKGEFLLHGYEMATAAKNTSKNKSKHTTNLKNVMLPKQEQALWYAFISHLKSNNML
PVVVFMLSRKRCDMISVLLRNVNLTTETEKHTIRVFFQNNIKHLKGTDRQLPQVLMIQEL
LQNGVGIHHSGILPILKEIIEMLFQSGIVKLLFATETFSMGMNMPARTVIFDSIRKYDGN
NFRILYPTEYIQMAGRAGRRGHDTAGMVVIMCRTSLPHLNELITMMCGQAQNLESKFKVT
YSMVLNLRRVHESVSVEAMMRRSFKESSFASKQNVYKVELQKVEDELSKLPPLTDLQKYL
CDFYKNAVDYLEYLKYLKPLLYETQKKIVQDLTPGRVLIISYASHYNKLALVLSTVQSKS
GRQYRVLVLKNSEPSKPAEENPSKAVKFKKSEKWHDMIALTKKELFVPSGVPVDEVLIIS
AWHILEITNCKINVDCALVLSSWGKKQIPKYRDTPCDQSYQFAIQQLMILSLSAAQYAPV
LQPYTEMKSNYNFKTKINRLLRLKKEVYDMKYTEISNFEEQFEIVFERSELESKKIKLQL
QLSDEKLSLYPDYTSAVALLKDLGYIDNDERVALKGRVALQMGSNELLITELILKNVLTI
LQPAEIAALLSTLVFQQRTNVEPHLTPELKRGYEAIQKIYSELESLEQHYQLATLQPLNI
GLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLKDVKIAAVTIGDPVLKEKME
EASTAIKRDIVFTPSLYTQD
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggaggataatacggatacagagttgcggtttatatcaccctctcttttgtct
gatagtcagactgtactgagagaatatattatgtgcgtggataatcttccgatataccat
ctggataatgcccaatgttattggccaaggaaacctgatattttgtctcttttggacttt
gatttagcatcgcctagcactatgttaaaatttgagcgtgatcctgttaccggagaactt
ggagaaatgtgcgaagttcctgtaacatcagccggtgaaaatgcacgaaattcaatgtct
atgacccgtgcaccagggcctgctacagataatataagaggaaatgccagtaatattcca
ttctggccgggtggcttcgatgaacctgaaatggtacaaaatttaacaatggaagatatc
gactttgaaaataatttaagaaccttggcgaaaggattcacagctggaatagaatttaaa
agtgataattgcactccaaaagaggcaacaacacaggaagaacagttattggaatcagag
aaaaatgaaatcgaaaaaatagcagagaaaattaatttaatggcgatcgtaaacgacgag
cggaatgtgctcgatatctggtcgtcaggaaaagacactaagaaagagaaagagactact
aaaccttcggatatacaagaatcatcgttcgatgaaattgttccgtttttagataaatcg
gatattcctgttttgaagatctcagataaacctgcagagaatgcaaaatcagagtgggcg
gaacaattagacgtgtcaattccaataaatgattttgataaacatatacctgatccagca
atgtgttttccttacgaattggatactttccagaaacaagcaatccttaagttagaagag
aactgtaatgtatttgttgccgctcatacatcggctggaaaaacgacagtagcggaatac
gcgatcgcgttaagtcaaaaacatatgacaagggtcatctatacatctcctataaaggca
ctttcgaatcaaaaatatcgcgatttcaaaaaaaaatttgacagtgtcggattgttaaca
ggggacctgcaaattaactcgaatgcttcgtgtcttatcatgactacagaaattttacaa
tccatgttatactgtgcagcagacgttttaagagatttagaatttgttattttcgacgag
gtgcattatattaataatgacgaacgtggtcatgtttgggaagaaagtgtcattctttta
ccaaaaacagttaacatagtaatgttgtctgcgactgtaccgaatccactagtatttgca
gactgggtcggtcgtactaagaaaaaaaaaatgtttgtgataagtactttgaaacgacca
gtaccgctacaacattatttatatactggaacaaatggtaaaactagacacgatagattt
ttagtgttaaacgaaaagggtgaatttttgcttcatgggtacgagatggcaacggctgcg
aaaaatacaagtaaaaataagtctaaacatactacaaatttgaagaatgttatgttgcca
aaacaagagcaggcgttgtggtatgctttcatcagtcacctcaagagcaataatatgtta
cctgtcgttgtgtttatgttatcacgaaagcgttgcgacatgatatcagttttattaaga
aatgtcaatctcactaccgaaactgaaaaacataccatcagagtctttttccaaaataat
attaagcatttgaaaggcacggatagacagttgccacaagttctcatgatacaagaattg
ttgcaaaatggtgttggcatacatcacagtggtatattacctattttaaaggagataata
gaaatgctttttcaaagtggaattgtaaagttgctgtttgcgacagaaacattttcaatg
ggtatgaacatgccagcacgtaccgtaattttcgactccattagaaaatacgatggtaac
aattttcggatactttatcctaccgaatacatacaaatggctggtcgtgctggtcgtaga
ggccacgacacggcaggaatggttgtaattatgtgtcgtacatcgttaccacatctgaac
gaactgataactatgatgtgtggtcaagctcaaaacctagaatctaaatttaaagtaaca
tactccatggttttaaatctgagacgagtacacgaatcggtatctgtcgaggcaatgatg
cgcagatcctttaaagaatcgtcgttcgcttcgaaacaaaatgtttacaaagtcgaatta
caaaaagtggaagacgaactatcaaagttaccgcccttaactgatctacaaaaatacctg
tgtgatttttataagaatgccgtcgactacttggagtatctaaaatatttaaaaccgctt
ttatacgagacacagaagaagatagtacaagatttaacacctggcagagttttgattata
tcttatgcaagccactacaataaactagctctcgtattgagtacagttcaaagtaaaagc
ggtagacaatacagggtattagttcttaagaattccgaaccatcgaaacctgccgaggaa
aatccatcgaaagcggttaagttcaagaagtccgaaaaatggcacgacatgatcgcttta
acaaaaaaagagttgttcgtaccatctggagttccagtcgacgaagtgttaattatatct
gcgtggcatatattagaaataacaaattgcaaaattaatgtagattgcgctttagtcctc
tcaagttggggaaaaaagcaaataccaaaatatagggacacgccttgtgatcaatcttat
caattcgctatacaacaattaatgatattgtcgttgagtgctgctcaatatgctcccgtt
ttacaaccttatacggaaatgaaatcgaactataattttaaaacgaaaataaatcggttg
cttcgtttaaaaaaagaagtttacgatatgaaatacacagaaatttcaaattttgaagaa
caatttgaaatcgtattcgaacgaagcgaattagaaagcaagaagataaagcttcagctt
caacttagcgacgaaaagttgagtctttatcccgactatacaagcgctgttgctcttctt
aaagatttgggatacatagataacgatgaaagagttgcattgaaaggacgagtcgcgctt
cagatgggtagtaacgaattgctaattacagaacttattcttaaaaatgtattaacaata
cttcagccggctgaaatagcagcattgttgtctactttagtgtttcaacaacgaacgaac
gttgaaccacatcttactccagaattgaagaggggatacgaagcaatacaaaagatatat
tccgaattagaatctttagaacagcattatcaattagcaacgctgcaaccgttgaatatc
ggtttggttgaagtggtgtacgattgggcgcaagcaaaatcgttcgccgagattatggag
aaaacggatgtacaagaaggaatcatagtacgatgtattcaacaattaagcgaaacgtta
aaggacgttaaaattgcagctgtaactattggtgatcctgttttaaaggaaaagatggaa
gaagcttcaactgctattaagagggatatcgtttttaccccgtctttgtatacacaagat
tga
DBGET
integrated database retrieval system
